Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 8.1e-299 1029.6 518 100.0
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 1.9e-287 991.9 516 95.9
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 4.3e-284 980.7 519 95.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 6.0e-278 960.3 519 92.9
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 7.9e-278 959.9 518 93.1
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 1.1e-271 939.5 519 90.8
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 1.8e-269 932.2 519 89.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 2.5e-268 928.3 520 90.0
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 3.2e-263 911.4 543 85.8
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 3.7e-259 897.9 519 87.7
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 3.7e-259 897.9 519 85.4
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 4.8e-259 897.5 519 85.7
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 8.2e-259 896.7 519 85.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 1.1e-258 896.3 519 84.8
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.1e-258 894.8 519 85.4
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 1.2e-257 892.9 519 85.9
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 2.0e-257 892.1 519 85.4
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 4.5e-257 891.0 519 85.2
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 8.5e-256 886.7 519 85.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 2.5e-255 885.2 519 84.6
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 3.2e-255 884.8 519 84.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 7.2e-255 883.6 519 84.2
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.1e-254 882.1 519 84.0
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 2.1e-254 882.1 519 84.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 7.9e-254 880.2 519 83.8
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 1.0e-253 879.8 519 83.8
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 1.0e-253 879.8 519 83.8
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.8e-253 879.0 519 83.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 1.8e-253 879.0 520 84.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 5.1e-253 877.5 564 78.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 4.3e-252 874.4 519 83.2
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.7e-252 873.2 519 82.7
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-251 872.1 519 82.5
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.1e-250 869.8 519 82.3
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.8e-250 869.0 543 80.1
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 1.8e-250 869.0 520 83.3
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 1.8e-250 869.0 519 82.5
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 4.1e-250 867.8 519 82.9
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.3e-248 862.8 543 79.7
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 2.9e-248 861.7 519 81.5
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.9e-247 859.0 543 79.2
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 3.2e-247 858.2 515 81.7
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 5.5e-247 857.4 520 81.3
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 7.9e-246 853.6 515 82.1
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 1.0e-245 853.2 528 79.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 1.4e-245 852.8 519 81.1
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 2.3e-245 852.0 519 81.1
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 5.1e-245 850.9 519 80.7
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 2.6e-244 848.6 519 80.9
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 5.7e-244 847.4 516 81.6
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 9.7e-244 846.7 519 80.7
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 9.7e-244 846.7 520 80.4
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 1.3e-243 846.3 519 80.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-243 845.1 519 80.5
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 4.8e-243 844.3 519 81.5
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 8.2e-243 843.6 519 80.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.4e-242 842.8 521 80.4
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 1.4e-242 842.8 519 79.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 3.1e-242 841.6 465 90.8
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 4.1e-242 841.3 520 79.2
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 5.3e-242 840.9 519 79.2
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 1.2e-241 839.7 521 80.2
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 2.0e-241 839.0 521 80.2
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 2.0e-241 839.0 519 80.0
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 2.0e-241 839.0 520 79.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 4.5e-241 837.8 526 80.0
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 7.7e-241 837.0 519 79.4
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 1.7e-240 835.9 519 79.4
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 2.9e-240 835.1 519 79.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 6.5e-240 833.9 519 79.4
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.5e-239 832.8 551 77.1
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 7.2e-239 830.5 531 78.2
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 1.2e-238 829.7 526 79.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 8.0e-238 827.0 559 75.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 2.0e-236 822.4 519 78.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 2.0e-236 822.4 519 79.4
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 2.0e-236 822.4 524 77.7
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 2.0e-236 822.4 519 78.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 3.3e-236 821.6 534 76.6
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 4.4e-236 821.2 526 77.9
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 2.4e-234 815.5 519 79.6
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.0e-234 813.9 519 77.6
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 2.0e-233 812.4 534 76.6
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 2.2e-232 808.9 519 77.5
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.0e-232 807.7 546 74.2
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.1e-231 806.6 519 77.5
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 1.5e-231 806.2 536 75.6
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 1.9e-231 805.8 519 77.3
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 9.4e-231 803.5 519 78.2
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 1.0e-229 800.0 521 77.2
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 8.3e-227 790.4 535 75.0
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 1.4e-226 789.6 516 77.3
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 5.0e-224 781.2 519 75.3
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.9e-223 779.2 525 72.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 5.9e-217 757.7 418 89.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 2.3e-213 745.7 522 70.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 5.2e-213 744.6 550 70.4
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 9.8e-212 740.3 467 77.9
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 2.3e-208 729.2 518 71.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 3.3e-207 725.3 519 69.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.6e-206 723.0 519 71.1
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 2.0e-196 689.5 523 66.9
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 2.4e-194 682.6 476 70.6
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.9e-175 619.8 516 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.4e-173 612.8 520 58.3
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.1e-170 604.0 514 64.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 2.3e-168 596.3 522 57.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.1e-162 577.4 336 84.2
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 2.0e-156 556.6 347 81.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.0e-155 554.3 517 52.2
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 4.9e-155 552.0 347 80.4
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 1.1e-143 514.2 323 81.1
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 6.1e-137 491.9 302 83.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 5.3e-133 478.8 293 85.7
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 1.4e-130 470.7 292 81.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 1.9e-130 470.3 293 82.3
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.5e-103 380.9 230 76.5
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.8e-100 368.6 231 73.6
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 3.6e-97 359.8 204 82.8
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 7.8e-92 342.0 207 78.3
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 5.2e-88 329.3 279 64.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-86 324.3 231 67.1
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-84 317.8 240 69.6
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.5e-79 301.2 178 79.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.4e-77 294.7 208 73.1
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 3.2e-69 266.9 441 38.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 6.0e-68 262.7 153 79.7
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.9e-66 257.7 127 95.3
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.3e-57 228.4 152 72.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 6.0e-52 209.5 507 30.4
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.7e-46 191.4 109 89.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.6e-42 175.6 518 26.8
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.3e-38 165.2 174 58.6
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 7.2e-29 132.9 741 21.7
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.7e-28 131.0 81 74.1
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.9e-22 110.9 91 63.7
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.0e-22 110.2 90 64.4
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.0e-18 98.2 52 86.5
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.3e-17 93.2 100 54.0
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-11 75.9 47 61.7
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 2.3e-11 74.7 180 32.8
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-10 72.4 47 76.6
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 4.4e-10 70.5 47 76.6
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 4.4e-10 70.5 50 72.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 4.1e-08 63.9 48 68.8
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 4.5e-07 60.5 72 50.0


User provided reference genes

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