Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 2858.2 1435 100.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 2552.7 1434 89.9
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 2486.4 1421 88.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 2452.6 1481 84.3
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 2253.0 1432 79.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 2205.3 1441 77.9
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2117.8 1442 74.5
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 2058.5 1442 73.4
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1894.4 1443 68.3
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1893.6 1443 68.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1566.6 1439 57.7
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1545.8 1446 57.4
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1538.5 1443 56.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1530.0 1463 55.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1530.0 1446 56.8
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1526.1 1650 51.3
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1515.0 1445 55.8
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1513.8 1450 55.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1494.2 1440 55.1
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1492.2 917 83.2
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1489.9 1451 55.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1485.7 1491 54.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1482.6 1439 55.7
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1476.1 1465 54.9
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1473.0 1449 55.4
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1470.7 1449 55.2
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1461.8 1477 53.6
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1461.8 1256 61.0
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1442.9 1456 54.1
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1421.8 1449 53.7
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1407.1 1439 52.7
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1406.3 1456 53.8
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1386.3 1442 52.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1375.9 1448 51.2
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1367.8 1443 52.0
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1366.3 1445 51.8
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1357.4 1447 51.8
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1352.8 1442 52.6
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1336.2 1434 49.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1329.7 1440 51.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1327.8 1441 50.1
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1325.1 1437 50.5
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1315.4 1441 50.6
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1310.8 1424 50.8
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1297.7 1457 48.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1285.4 1448 49.9
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1280.8 1434 48.5
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1278.1 1441 50.6
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1275.4 1442 49.6
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1275.4 1448 50.1
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1271.5 1442 48.5
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1270.0 1503 47.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 0.0e+00 1265.8 1514 49.0
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1264.2 1442 48.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1263.8 1347 50.9
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1263.1 1445 49.2
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1263.1 1427 49.0
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1257.7 1441 49.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1255.4 1444 48.7
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1253.8 1109 59.6
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1251.9 1346 49.6
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1249.6 1443 48.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1248.0 1442 48.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1246.5 1440 49.4
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1241.9 1443 48.7
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1236.5 1465 47.9
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1236.1 1449 49.1
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1235.7 1523 47.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1233.4 1426 48.4
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1208.0 1440 48.1
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1203.3 1445 48.5
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1201.8 1149 56.8
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1197.2 1456 45.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1161.0 1451 46.5
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1111.7 1437 45.4
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1102.8 1352 45.8
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1082.0 1399 43.8
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.6e-310 1069.3 1476 42.8
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 9.1e-308 1060.8 1353 46.3
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 4.1e-300 1035.4 1449 43.1
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 2.6e-299 1032.7 1322 45.1
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.0e-271 939.5 786 62.0
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 5.1e-242 842.4 735 59.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 2.3e-218 763.8 1504 33.2
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.6e-179 633.6 659 54.0
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.6e-155 553.9 548 53.5
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 4.3e-148 530.4 598 54.0
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.6e-142 511.9 616 48.2
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.9e-136 491.1 569 46.9
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 7.6e-129 466.5 1077 32.2
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.9e-128 463.8 732 38.8
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.8e-122 445.3 391 61.1
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.7e-117 428.7 624 40.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 4.5e-113 414.1 328 64.9
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 4.2e-111 407.5 334 65.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 2.7e-110 404.8 347 62.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.0e-110 403.7 545 42.4
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 9.3e-95 353.2 479 41.5
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 4.5e-89 334.3 369 50.7
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.9e-89 334.0 584 35.4
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.9e-85 321.2 347 51.3
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-84 318.9 253 63.2
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.3e-84 318.2 488 40.8
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 9.1e-74 283.5 494 35.8
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.7e-70 271.2 507 33.5
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.0e-64 253.4 137 86.9
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.2e-64 252.3 374 38.8
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.2e-59 235.7 142 80.3
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 8.8e-53 213.8 886 26.2
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.0e-52 212.6 399 34.1
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 4.9e-51 208.0 297 41.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.8e-45 189.5 429 32.9
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 4.4e-44 184.9 168 60.1
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 9.5e-39 167.2 94 86.2
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 8.0e-38 164.1 212 42.5
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.4e-36 158.7 144 58.3
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-34 152.9 85 89.4
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 4.1e-34 151.8 85 87.1
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 3.0e-32 145.6 94 75.5
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 2.0e-28 132.9 140 52.9
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.2e-27 129.4 191 41.4
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.9e-27 129.0 74 83.8
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.2e-25 123.6 130 51.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.6e-25 121.7 82 72.0
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 8.6e-24 117.5 82 69.5
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.3e-23 115.5 82 68.3
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.1e-21 110.5 123 51.2
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 3.4e-20 105.5 70 78.6
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.7e-19 102.1 82 61.0
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 6.4e-19 101.3 70 77.1
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 2.4e-18 99.4 345 26.4
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 5.4e-18 98.2 64 79.7
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 4.6e-17 95.1 159 37.1
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.3e-16 92.8 52 90.4
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.3e-16 92.8 52 90.4
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.3e-16 92.8 52 90.4
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.0e-16 92.4 173 35.3
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 1.9e-15 89.7 140 42.9
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.3e-15 89.0 48 91.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.3e-15 89.0 481 20.8
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 4.3e-15 88.6 117 44.4
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 2.8e-14 85.9 104 47.1
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 2.0e-12 79.7 62 62.9
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 4.4e-12 78.6 62 58.1
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 3.8e-11 75.5 83 47.0
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 9.3e-10 70.9 52 73.1
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 2.7e-09 69.3 62 56.5
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.0e-08 67.4 203 30.0
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 5.1e-08 65.1 79 49.4
arahy.Tifrunner.gnm1.ann1.3X15P1 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.1e-07 63.9 35 85.7
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 7.3e-07 61.2 79 48.1
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 7.3e-07 61.2 138 34.8
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 4.8e-06 58.5 179 27.9
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 8.1e-06 57.8 75 45.3


User provided reference genes

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