Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 6.7e-251 870.2 421 100.0
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 5.9e-223 777.3 422 88.2
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 5.9e-223 777.3 422 88.2
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.9e-221 772.3 421 86.9
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.6e-218 761.9 420 88.1
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 3.2e-205 718.4 421 80.5
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.4e-202 708.4 421 80.0
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.0e-198 696.8 421 79.1
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 6.1e-196 687.6 425 77.6
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 2.9e-190 668.7 396 79.8
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 7.3e-189 664.1 422 76.3
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.4e-187 659.8 417 75.1
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.7e-182 642.9 495 63.8
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.2e-177 625.9 523 60.2
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.4e-171 606.7 421 68.4
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 2.7e-167 592.4 421 66.5
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.0e-166 590.5 421 66.5
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 3.3e-165 585.5 417 66.9
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 5.6e-165 584.7 417 66.9
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.8e-164 582.4 421 65.8
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.8e-164 582.4 422 67.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.6e-164 582.0 422 66.4
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.6e-162 574.3 421 63.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 9.9e-162 573.9 419 65.2
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.3e-161 573.5 420 64.3
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 6.4e-161 571.2 418 64.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 8.4e-161 570.9 424 64.9
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.4e-160 570.1 427 64.4
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.9e-160 569.7 423 64.5
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.9e-160 569.7 426 64.3
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.2e-160 568.9 424 65.1
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.2e-160 568.9 424 64.9
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 7.1e-160 567.8 421 65.8
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.5e-159 565.5 423 65.5
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 3.5e-159 565.5 424 66.3
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 6.0e-159 564.7 422 65.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 6.0e-159 564.7 421 63.7
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-158 562.4 419 64.4
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 4.3e-157 558.5 420 64.5
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 2.1e-156 556.2 421 62.9
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 3.6e-156 555.4 421 62.9
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 4.7e-156 555.1 422 64.5
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 6.2e-156 554.7 419 63.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.1e-155 553.9 429 63.4
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.8e-155 553.1 419 63.0
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.8e-155 553.1 421 63.4
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 4.0e-155 552.0 419 62.5
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 5.2e-155 551.6 420 62.4
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 6.9e-155 551.2 419 62.5
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 5.8e-154 548.1 424 62.3
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 9.9e-154 547.4 427 62.1
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.3e-153 547.0 422 63.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.9e-152 543.1 424 62.3
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 5.4e-152 541.6 422 60.7
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 7.1e-152 541.2 424 63.0
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.2e-151 540.4 419 63.5
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.2e-151 540.4 422 62.3
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 4.6e-151 538.5 449 59.0
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.1e-149 533.9 421 62.9
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.6e-148 530.0 435 58.4
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 6.2e-148 528.1 424 61.6
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 3.1e-147 525.8 410 61.2
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.0e-147 525.4 392 64.5
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 4.0e-147 525.4 426 58.0
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 9.0e-147 524.2 423 60.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.2e-146 523.9 524 51.7
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.9e-144 516.5 420 58.1
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 6.0e-143 511.5 422 57.8
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 4.3e-141 505.4 424 57.3
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.6e-141 505.0 420 57.6
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 9.6e-141 504.2 420 57.9
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.8e-140 502.7 424 56.6
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.4e-139 500.4 395 61.5
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.4e-139 500.4 422 56.4
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.1e-139 499.2 421 57.5
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.9e-139 498.0 423 56.3
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 9.0e-139 497.7 421 58.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.5e-138 496.9 421 55.8
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 2.6e-138 496.1 393 60.1
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 9.9e-138 494.2 426 57.5
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 9.9e-138 494.2 428 58.2
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 3.2e-136 489.2 423 54.4
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 4.2e-136 488.8 416 57.7
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 9.3e-136 487.6 419 55.8
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.7e-135 486.1 421 55.6
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 3.5e-135 485.7 423 56.7
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 7.9e-135 484.6 433 55.0
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.0e-134 484.2 421 55.3
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.8e-134 483.4 454 53.3
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 3.0e-134 482.6 460 52.0
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.8e-132 476.1 419 54.9
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 3.7e-132 475.7 468 52.6
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 6.2e-132 474.9 425 56.2
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.4e-131 473.8 423 53.9
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 9.0e-131 471.1 425 55.1
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 9.0e-131 471.1 424 54.7
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 5.8e-130 468.4 427 54.1
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 4.9e-129 465.3 402 58.7
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 8.4e-129 464.5 423 54.1
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.1e-128 464.2 413 54.0
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 3.2e-128 462.6 481 49.1
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.6e-127 458.8 427 52.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 7.9e-127 458.0 427 52.5
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 7.9e-127 458.0 427 52.5
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.0e-126 457.6 372 58.9
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.8e-126 456.8 427 52.5
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 1.5e-125 453.8 428 53.5
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 2.5e-125 453.0 456 49.6
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.9e-118 429.1 342 61.4
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.9e-118 429.1 342 61.4
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.2e-108 396.7 431 47.1
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.2e-105 386.7 415 46.5
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 2.0e-101 373.6 439 44.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.0e-101 373.6 425 45.2
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.2e-100 370.2 424 46.9
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.4e-94 350.9 268 60.4
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.3e-91 339.0 275 58.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.7e-90 336.7 420 44.8
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.2e-87 327.8 419 42.7
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.2e-84 317.0 161 83.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.5e-80 304.3 425 38.6
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.4e-77 292.7 141 88.7
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 7.5e-77 292.0 544 33.8
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 8.3e-76 288.5 168 76.2
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.0e-65 255.0 135 80.7
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 7.3e-56 222.2 121 77.7
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.3e-48 195.7 91 89.0
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-40 171.4 194 44.8
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.8e-30 137.9 81 74.1
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.5e-29 133.3 142 46.5
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.1e-26 124.4 73 76.7
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.1e-26 124.4 73 76.7
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.0e-25 122.1 66 77.3
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.6e-24 116.3 97 55.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 4.8e-23 113.2 59 79.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 1.2e-18 98.6 66 66.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 2.8e-15 87.4 158 34.2
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.5e-11 74.3 74 52.7
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.6e-10 71.6 61 59.0
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 6.0e-10 69.7 75 50.7


User provided reference genes

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