Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.8e-167 592.4 283 100.0
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 3.8e-117 425.2 424 54.5
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 5.0e-117 424.9 430 53.7
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 5.0e-117 424.9 430 53.7
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 2.6e-113 412.5 429 52.7
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.7e-112 409.8 434 51.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.4e-111 406.8 426 51.6
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-111 406.0 430 51.9
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.6e-110 403.3 429 50.8
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.6e-110 403.3 425 51.5
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.6e-110 403.3 425 51.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.3e-109 400.2 428 50.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.9e-109 399.1 428 50.7
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.8e-109 398.7 427 50.8
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.8e-109 398.7 441 49.9
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 6.5e-109 397.9 425 51.3
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 8.5e-109 397.5 414 51.4
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.5e-108 396.7 427 49.6
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 1.5e-108 396.7 415 51.3
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.9e-108 396.4 421 51.1
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.9e-108 396.4 421 51.3
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.9e-108 396.4 416 51.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 2.5e-108 396.0 438 49.8
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 3.2e-108 395.6 432 50.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 4.2e-108 395.2 433 49.7
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 5.5e-108 394.8 415 51.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 7.2e-108 394.4 432 50.0
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.2e-108 394.4 434 50.2
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 9.4e-108 394.0 433 49.7
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 9.4e-108 394.0 428 50.7
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.2e-107 393.7 437 48.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.6e-107 393.3 417 52.0
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.6e-107 393.3 417 52.0
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.6e-107 393.3 417 52.0
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.6e-107 393.3 418 50.7
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-107 393.3 397 52.4
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.6e-107 393.3 434 50.5
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.6e-107 393.3 428 51.2
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 2.1e-107 392.9 427 50.1
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.7e-107 392.5 418 50.7
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.6e-107 392.1 421 50.6
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 4.7e-107 391.7 415 51.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.7e-107 391.7 433 49.2
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 6.1e-107 391.3 430 49.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 8.0e-107 391.0 433 49.7
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.0e-106 390.6 423 50.1
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.4e-106 390.2 417 51.1
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.4e-106 390.2 421 51.3
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 1.8e-106 389.8 438 48.9
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 2.3e-106 389.4 417 50.8
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.3e-106 389.4 418 50.2
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.0e-106 389.0 417 50.8
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.0e-106 389.0 417 50.8
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 3.0e-106 389.0 433 49.2
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 4.0e-106 388.7 420 50.2
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 5.2e-106 388.3 425 49.9
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 6.7e-106 387.9 433 49.7
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 8.8e-106 387.5 414 51.2
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 8.8e-106 387.5 423 50.6
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 8.8e-106 387.5 428 49.5
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-105 387.1 416 51.2
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.2e-105 387.1 416 51.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.2e-105 387.1 420 51.0
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.2e-105 387.1 428 49.3
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.5e-105 386.7 414 50.0
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.5e-105 386.7 430 49.3
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.0e-105 386.3 410 51.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.4e-105 385.2 424 49.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 5.7e-105 384.8 420 50.7
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 5.7e-105 384.8 433 49.2
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 7.5e-105 384.4 428 48.8
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 7.5e-105 384.4 417 50.6
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 7.5e-105 384.4 419 50.1
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 9.7e-105 384.0 447 48.8
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-104 383.3 417 50.4
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.7e-104 383.3 417 50.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.7e-104 383.3 422 49.3
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.2e-104 382.9 426 49.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 2.8e-104 382.5 410 50.5
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 3.7e-104 382.1 425 49.6
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.8e-104 381.7 421 49.2
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 8.2e-104 380.9 417 50.1
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 8.2e-104 380.9 431 48.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.8e-103 379.8 427 48.7
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 3.1e-103 379.0 417 49.6
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 5.3e-103 378.3 423 50.1
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 9.1e-103 377.5 222 79.7
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.6e-102 376.7 422 49.8
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.6e-102 376.7 425 48.5
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.5e-102 375.6 221 81.0
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 4.5e-102 375.2 221 81.0
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.9e-100 369.8 217 81.1
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.9e-100 369.8 222 77.9
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 5.5e-100 368.2 216 79.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.5e-100 368.2 437 46.7
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.6e-99 366.7 440 46.4
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.8e-98 363.2 218 78.0
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.2e-97 360.5 217 77.9
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.2e-97 360.5 221 78.7
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.7e-96 356.7 410 47.6
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 2.2e-96 356.3 217 78.3
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 4.8e-96 355.1 217 77.4
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 4.8e-96 355.1 421 46.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.4e-95 353.6 217 77.9
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.2e-94 350.5 350 52.3
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 8.6e-93 344.4 217 75.6
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.5e-92 343.6 428 44.9
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 2.5e-92 342.8 414 47.6
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.2e-91 340.5 410 46.1
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 2.3e-90 336.3 415 45.3
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.0e-90 335.5 230 69.1
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 5.2e-90 335.1 217 71.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.2e-89 334.0 410 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.0e-89 333.2 216 71.3
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 3.4e-89 332.4 423 44.4
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 4.4e-89 332.0 222 69.4
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 3.7e-88 328.9 223 68.2
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 6.3e-88 328.2 429 44.5
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-87 327.4 419 44.6
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.0e-86 323.2 436 42.7
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-85 320.5 420 44.0
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 6.6e-85 318.2 230 68.3
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 6.6e-85 318.2 369 50.1
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.5e-84 314.3 426 41.3
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.3e-82 309.7 422 41.7
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.4e-81 305.8 205 70.2
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 9.8e-81 304.3 421 41.6
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.1e-79 300.8 214 65.0
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 7.0e-79 298.1 216 63.4
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.6e-78 297.0 372 44.6
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 4.6e-78 295.4 166 82.5
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 1.0e-77 294.3 217 62.7
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.7e-77 293.5 371 45.8
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.0e-77 292.0 222 65.8
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.6e-75 287.0 382 44.2
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 3.6e-75 285.8 224 63.8
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 6.2e-75 285.0 213 63.8
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 2.3e-74 283.1 366 44.8
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.3e-74 283.1 176 77.8
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 4.9e-72 275.4 423 40.2
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.1e-71 274.2 181 73.5
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 4.6e-70 268.9 218 56.9
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 6.6e-69 265.0 433 38.6
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.3e-68 262.3 217 59.0
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 7.3e-68 261.5 221 60.6
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.6e-65 253.1 169 69.8
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.5e-65 251.5 221 53.8
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 4.1e-63 245.7 198 65.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.2e-63 244.6 205 59.0
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.2e-63 244.6 205 59.0
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.3e-61 240.7 333 43.2
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.0e-61 239.6 200 59.5
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.0e-61 239.6 200 59.5
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.0e-61 239.6 200 59.5
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.9e-61 239.2 332 42.2
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.5e-52 210.7 217 53.9
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.6e-49 199.9 319 39.2
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 5.4e-47 192.2 105 83.8
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.3e-45 186.8 104 81.7
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 3.7e-35 152.9 88 79.5
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.0e-34 149.4 88 77.3
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.2e-33 147.9 100 71.0
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.0e-29 134.8 88 73.9
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 3.0e-29 133.3 161 49.1
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 6.7e-29 132.1 76 80.3
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.7e-29 131.7 290 31.0
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.9e-24 115.9 148 45.9
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.0e-21 108.2 56 89.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.3e-21 107.8 71 73.2
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.9e-21 106.3 64 71.9
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 9.7e-20 101.7 52 86.5
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 5.3e-18 95.9 62 74.2
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.5e-17 94.4 61 72.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-15 87.0 70 57.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-15 87.0 70 57.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-15 87.0 70 57.1
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.5e-15 87.0 70 57.1
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.5e-12 77.8 87 48.3
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 3.7e-11 73.2 48 70.8
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 6.3e-11 72.4 38 84.2
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 1.5e-09 67.8 44 72.7
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 2.5e-07 60.5 55 50.9


User provided reference genes

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