Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.6e-112 408.7 200 100.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.7e-106 388.3 200 94.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 3.4e-104 381.7 200 94.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.4e-102 376.3 200 92.5
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.8e-90 334.7 198 80.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.2e-88 330.1 200 80.0
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.5e-88 329.7 200 80.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 6.5e-87 324.3 200 78.5
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 5.5e-86 321.2 200 77.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 9.3e-86 320.5 200 77.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.7e-85 318.9 198 78.3
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.6e-85 318.5 200 79.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 6.1e-85 317.8 200 79.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.1e-85 317.8 200 74.0
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.7e-84 313.9 201 76.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.5e-83 312.4 201 75.6
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 5.7e-83 311.2 201 75.6
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 6.3e-82 307.8 200 75.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.6e-80 302.4 200 73.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 4.2e-78 295.0 198 71.7
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 7.2e-78 294.3 148 95.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.6e-77 293.1 200 70.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.6e-77 293.1 200 69.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.6e-77 292.0 202 70.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 3.6e-77 292.0 202 70.3
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 6.1e-77 291.2 200 72.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.3e-76 289.3 200 71.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 3.0e-76 288.9 203 71.4
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 8.8e-76 287.3 202 69.8
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.5e-75 286.6 203 69.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.6e-75 285.8 197 67.0
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.3e-75 285.4 203 69.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.4e-75 285.0 197 68.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 4.4e-75 285.0 197 68.5
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.7e-75 284.6 203 69.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.7e-74 283.1 203 71.4
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.7e-74 282.0 200 68.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.1e-73 280.4 200 67.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.1e-73 280.4 197 66.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.8e-73 279.6 203 69.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.4e-73 279.3 189 67.7
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 4.1e-73 278.5 201 68.2
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 4.1e-73 278.5 201 68.2
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.9e-73 277.7 203 69.0
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.9e-73 277.7 199 68.3
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 6.9e-73 277.7 203 67.5
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 9.1e-73 277.3 199 68.3
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.2e-72 276.9 203 66.5
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.2e-72 276.9 189 67.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.0e-72 276.2 189 67.7
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.0e-72 276.2 189 68.3
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.4e-72 275.4 197 64.0
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 3.4e-72 275.4 200 66.5
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 3.4e-72 275.4 200 66.5
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 7.7e-72 274.2 197 68.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 7.7e-72 274.2 136 96.3
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-71 273.9 199 67.3
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.3e-71 273.5 203 66.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.2e-71 272.7 193 68.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-71 272.7 191 77.0
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.9e-71 272.3 203 65.5
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.9e-70 269.6 200 65.0
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.2e-69 266.9 144 88.2
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.6e-69 266.5 194 67.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.6e-69 266.5 199 63.3
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.7e-69 265.8 202 65.3
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 3.6e-69 265.4 200 64.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 7.9e-69 264.2 200 66.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 7.9e-69 264.2 194 66.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-68 263.5 194 68.0
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.8e-68 263.1 201 63.2
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 5.2e-68 261.5 200 66.0
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.7e-68 261.2 201 62.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 8.8e-68 260.8 196 62.8
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-67 260.4 194 65.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.0e-67 259.6 196 62.2
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 4.4e-67 258.5 200 65.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 7.4e-67 257.7 201 62.2
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 9.7e-67 257.3 187 70.6
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 9.7e-67 257.3 200 64.0
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 9.1e-65 250.8 201 60.2
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 3.5e-64 248.8 200 62.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.5e-64 248.4 196 60.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.7e-64 247.7 195 61.0
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.0e-63 247.3 195 62.1
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-63 246.1 200 61.5
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-63 246.1 200 61.5
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 5.0e-63 245.0 197 60.9
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 5.0e-63 245.0 268 51.5
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 8.5e-63 244.2 194 61.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.5e-63 244.2 200 61.5
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.2e-62 241.9 192 60.9
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 2.7e-61 239.2 196 56.6
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.6e-61 238.8 201 62.7
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 4.7e-61 238.4 195 60.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 6.1e-61 238.0 198 61.6
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 4.0e-60 235.3 227 55.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 2.6e-59 232.6 227 54.6
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 5.7e-59 231.5 172 65.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.7e-58 229.9 233 54.1
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 4.8e-58 228.4 248 50.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 4.8e-58 228.4 143 77.6
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.3e-58 228.0 230 52.2
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 8.2e-58 227.6 226 54.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.7e-56 222.6 190 56.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 7.7e-56 221.1 227 52.0
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.3e-55 220.3 175 61.1
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 7.2e-54 214.5 208 55.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.8e-52 209.9 145 73.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.0e-52 208.8 229 50.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.6e-51 206.1 175 64.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 7.5e-51 204.5 189 51.3
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.8e-50 202.6 197 49.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.8e-50 202.6 233 46.4
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 6.3e-50 201.4 233 47.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.4e-49 199.5 230 47.0
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.1e-49 199.1 222 49.1
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 4.1e-49 198.7 230 46.5
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 5.0e-47 191.8 196 50.5
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.5e-47 191.4 114 80.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 8.6e-47 191.0 153 62.7
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 8.6e-47 191.0 113 84.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.3e-46 189.1 197 52.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-45 187.2 154 59.1
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.6e-45 185.7 201 47.8
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.6e-45 185.7 201 47.8
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 6.1e-45 184.9 252 41.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.4e-43 179.1 205 48.3
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.8e-41 173.3 191 48.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.0e-40 169.9 198 46.5
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.3e-39 167.2 197 43.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 7.3e-38 161.4 159 53.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.1e-37 159.8 119 58.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.1e-37 159.8 187 49.2
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.8e-37 159.5 82 96.3
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.1e-37 158.3 116 69.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.0e-36 157.5 117 65.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-36 157.5 200 44.5
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.0e-35 153.3 189 44.4
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.4e-35 152.1 151 52.3
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.4e-35 152.1 206 40.3
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.9e-34 148.7 192 44.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.1e-33 145.6 110 65.5
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.7e-31 140.2 111 62.2
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 9.5e-30 134.4 149 49.0
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 9.5e-30 134.4 197 33.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-29 134.0 86 70.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.1e-28 131.0 197 42.1
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.3e-28 129.8 120 53.3
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 6.8e-20 101.7 204 29.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-15 87.8 61 72.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 5.1e-15 85.5 174 29.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 8.1e-13 78.2 65 53.8
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.4e-12 77.4 59 69.5
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.3e-07 60.1 48 56.2
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 7.3e-06 55.1 178 25.8
SHI09667 Sapria himalayana HOM05D000105 ORTHO05D000023 9.6e-06 54.7 53 47.2


User provided reference genes

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