Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25382 Trifolium pratense HOM05D006987 ORTHO05D000525 1.3e-129 466.5 252 100.0
Psat5g100080 Pisum sativum HOM05D006987 ORTHO05D000525 4.2e-91 338.6 250 71.2
Ca_16405_v3 Cicer arietinum L. HOM05D006987 ORTHO05D000525 1.5e-85 320.1 253 66.0
Ca_16413_v3 Cicer arietinum L. HOM05D006987 ORTHO05D000525 1.5e-85 320.1 253 66.0
Glyma.18G002300 Glycine max HOM05D006987 ORTHO05D000525 6.5e-76 288.1 246 62.6
arahy.Tifrunner.gnm1.ann1.DJC0ES Arachis hypogaea HOM05D006987 ORTHO05D000525 1.2e-74 283.9 252 58.7
Lj6g0000072 Lotus japonicus HOM05D006987 ORTHO05D000525 7.9e-74 281.2 233 61.8
VMungo1383G1416 Vigna mungo HOM05D006987 ORTHO05D000525 1.4e-73 280.4 250 59.2
Phvul.001G266900 Phaseolus vulgaris HOM05D006987 ORTHO05D000525 3.0e-73 279.3 252 57.9
arahy.Tifrunner.gnm1.ann1.753CXU Arachis hypogaea HOM05D006987 ORTHO05D000525 1.3e-71 273.9 248 57.7
Lalb_Chr23g0278321 Lupinus albus HOM05D006987 ORTHO05D000525 1.4e-62 243.8 249 53.0
Prupe.1G164900 Prunus persica HOM05D006987 ORTHO05D000525 1.4e-59 233.8 240 52.5
CSS0005381 Camellia sinensis var. sinensis HOM05D006987 ORTHO05D000525 5.5e-59 231.9 247 51.8
FAN22G1573 Fragaria x ananassa HOM05D006987 ORTHO05D000525 1.4e-57 227.3 236 50.8
FvH4_4g13310 Fragaria vesca HOM05D006987 ORTHO05D000525 5.2e-57 225.3 235 49.8
Manes.03G144300 Manihot esculenta HOM05D006987 ORTHO05D000525 1.1e-56 224.2 252 47.2
CiPaw.01G117000 Carya illinoinensis HOM05D006987 ORTHO05D000525 2.6e-56 223.0 244 50.4
MD05G1230400 Malus domestica HOM05D006987 ORTHO05D000525 2.6e-56 223.0 246 48.0
RcHm_v2.0_Chr4g0413601 Rosa chinensis HOM05D006987 ORTHO05D000525 5.7e-56 221.9 231 49.8
Cfa014998 Carpinus fangiana HOM05D006987 ORTHO05D000525 9.7e-56 221.1 241 50.2
Hma1.2p1_1286F.1_g273110 Hydrangea macrophylla HOM05D006987 ORTHO05D000525 9.7e-56 221.1 231 50.2
Dinv38173 Davidia involucrata HOM05D006987 ORTHO05D000525 1.3e-55 220.7 231 51.9
Thecc.04G195200 Theobroma cacao HOM05D006987 ORTHO05D000525 1.3e-55 220.7 244 49.2
Peaxi162Scf00047g00013 Petunia axillaris HOM05D006987 ORTHO05D000525 2.8e-55 219.5 231 50.6
Haze_11652 Corylus avellana HOM05D006987 ORTHO05D000525 8.2e-55 218.0 241 50.2
CANSAT78G0110 Cannabis sativa HOM05D006987 ORTHO05D000525 1.1e-54 217.6 255 47.1
Cpa.g.sc157.49 Carica papaya HOM05D006987 ORTHO05D000525 2.4e-54 216.5 244 48.0
Duzib212G0873 Durio zibethinus HOM05D006987 ORTHO05D000525 9.1e-54 214.5 241 47.7
Solyc09g092340.4 Solanum lycopersicum HOM05D006987 ORTHO05D000525 2.0e-53 213.4 231 49.8
Sopen09g035240 Solanum pennellii HOM05D006987 ORTHO05D000525 4.5e-53 212.2 231 49.4
Ciclev10005507m.g Citrus clementina HOM05D006987 ORTHO05D000525 7.7e-53 211.5 240 47.5
Potri.017G059200 Populus trichocarpa HOM05D006987 ORTHO05D000525 7.7e-53 211.5 243 47.7
Glyma.11G254800 Glycine max HOM05D006987 ORTHO05D000525 1.7e-52 210.3 249 51.0
Lj7C491T10 Lonicera japonica HOM05D006987 ORTHO05D000525 1.7e-52 210.3 246 46.7
Sed0013696 Sechium edule HOM05D006987 ORTHO05D000525 1.7e-52 210.3 232 46.1
CsaV3_3G010740 Cucumis sativus L. HOM05D006987 ORTHO05D000525 2.2e-52 209.9 237 46.0
PGSC0003DMG400020590 Solanum tuberosum HOM05D006987 ORTHO05D000525 2.2e-52 209.9 231 49.8
CAN.G1155.32 Capsicum annuum HOM05D006987 ORTHO05D000525 3.8e-52 209.1 231 49.4
Gohir.A10G127500 Gossypium hirsutum HOM05D006987 ORTHO05D000525 3.8e-52 209.1 244 45.5
Actinidia35841 Actinidia chinensis HOM05D006987 ORTHO05D000525 8.5e-52 208.0 246 47.6
Nitab4.5_0000697g0190 Nicotiana tabacum HOM05D006987 ORTHO05D000525 1.1e-51 207.6 231 48.5
Gohir.D10G138500 Gossypium hirsutum HOM05D006987 ORTHO05D000525 4.2e-51 205.7 244 45.1
Gorai.011G153800 Gossypium raimondii HOM05D006987 ORTHO05D000525 5.5e-51 205.3 244 44.7
Nitab4.5_0005704g0020 Nicotiana tabacum HOM05D006987 ORTHO05D000525 7.2e-51 204.9 233 47.6
TAR362G0731 Trochodendron aralioides HOM05D006987 ORTHO05D000525 1.6e-50 203.8 242 47.9
THA.LOC104804799 Tarenaya hassleriana HOM05D006987 ORTHO05D000525 2.7e-50 203.0 234 47.9
DCAR_024534 Daucus carota HOM05D006987 ORTHO05D000525 6.1e-50 201.8 239 44.8
Sabra17G0052800 Salix brachista HOM05D006987 ORTHO05D000525 1.0e-49 201.1 226 48.7
EL10Ac3g07455 Beta vulgaris HOM05D006987 ORTHO05D000525 1.4e-49 200.7 234 47.4
Migut.G00760 Erythranthe guttata HOM05D006987 ORTHO05D000525 2.3e-49 199.9 223 48.4
Cc03_g08460 Coffea canephora HOM05D006987 ORTHO05D000525 1.5e-48 197.2 231 46.3
TWI59G0841 Tripterygium wilfordii HOM05D006987 ORTHO05D000525 1.5e-48 197.2 236 44.9
Sc13g0000420 Simmondsia chinensis HOM05D006987 ORTHO05D000525 2.0e-48 196.8 226 48.7
Thhalv10025908m.g Eutrema salsugineum HOM05D006987 ORTHO05D000525 2.6e-48 196.4 228 45.2
COL.COLO4_20229 Corchorus olitorius HOM05D006987 ORTHO05D000525 3.4e-48 196.1 290 42.1
Eucgr.H02680 Eucalyptus grandis HOM05D006987 ORTHO05D000525 5.7e-48 195.3 235 46.4
MELO3C006293.2 Cucumis melo HOM05D006987 ORTHO05D000525 9.7e-48 194.5 266 41.4
CARHR219770 Cardamine hirsuta HOM05D006987 ORTHO05D000525 1.3e-47 194.1 226 44.7
BcaB02g08645 Brassica carinata HOM05D006987 ORTHO05D000525 1.7e-47 193.7 228 44.7
MBI07_g22388_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 1.7e-47 193.7 244 45.5
BcaC02g09380 Brassica carinata HOM05D006987 ORTHO05D000525 2.2e-47 193.4 228 45.2
BolC4t25783H Brassica oleracea HOM05D006987 ORTHO05D000525 2.2e-47 193.4 228 45.2
HanXRQChr01g0022161 Helianthus annuus HOM05D006987 ORTHO05D000525 2.2e-47 193.4 244 44.3
SalBow8G0102 Salvia bowleyana HOM05D006987 ORTHO05D000525 3.7e-47 192.6 248 44.4
BraA04t16513Z Brassica rapa HOM05D006987 ORTHO05D000525 4.8e-47 192.2 228 44.7
A04p08240 Brassica napus HOM05D006987 ORTHO05D000525 8.3e-47 191.4 228 44.7
C04p41950 Brassica napus HOM05D006987 ORTHO05D000525 8.3e-47 191.4 228 44.7
Hund19009 Selenicereus undatus HOM05D006987 ORTHO05D000525 8.3e-47 191.4 236 43.6
AUR62018557 Chenopodium quinoa HOM05D006987 ORTHO05D000525 1.1e-46 191.0 238 45.0
TAR362G1315 Trochodendron aralioides HOM05D006987 ORTHO05D000525 1.1e-46 191.0 229 46.7
MSTRG.9797 Avicennia marina HOM05D006987 ORTHO05D000525 1.4e-46 190.7 226 46.0
CDE02G4051 Ceratophyllum demersum HOM05D006987 ORTHO05D000525 1.4e-46 190.7 232 43.1
AL7G42630 Arabidopsis lyrata HOM05D006987 ORTHO05D000525 1.8e-46 190.3 225 44.9
Carub.0007s2858 Capsella rubella HOM05D006987 ORTHO05D000525 1.8e-46 190.3 228 43.4
Lsat_1_v5_gn_1_70741 Lactuca sativa HOM05D006987 ORTHO05D000525 7.0e-46 188.3 244 43.0
PSO063G0584 Papaver somniferum HOM05D006987 ORTHO05D000525 1.6e-45 187.2 236 44.9
PSO017G2771 Papaver somniferum HOM05D006987 ORTHO05D000525 3.5e-45 186.0 236 45.3
AT4G13870 Arabidopsis thaliana HOM05D006987 ORTHO05D000525 4.5e-45 185.7 225 44.9
AUR62020861 Chenopodium quinoa HOM05D006987 ORTHO05D000525 7.7e-45 184.9 224 44.6
Aqoxy2G03934 Aquilegia oxysepala HOM05D006987 ORTHO05D000525 1.3e-44 184.1 237 43.9
Sp7g11720 Schrenkiella parvula HOM05D006987 ORTHO05D000525 2.9e-44 183.0 229 44.1
Aa31LG9G3650 Aethionema arabicum HOM05D006987 ORTHO05D000525 5.0e-44 182.2 225 43.1
vmacro00437 Vaccinium macrocarpon HOM05D006987 ORTHO05D000525 3.2e-43 179.5 287 39.0
ClCG05G003120 Citrullus lanatus HOM05D006987 ORTHO05D000525 5.5e-43 178.7 238 42.9
ECA248G2055 Erigeron canadensis HOM05D006987 ORTHO05D000525 2.7e-42 176.4 239 41.0
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 4.7e-42 175.6 230 43.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.0e-41 174.5 216 45.8
ATR0787G042 Amborella trichopoda HOM05D006987 ORTHO05D000525 4.0e-41 172.6 235 42.6
QL06p025925 Quercus lobata HOM05D006987 ORTHO05D000525 4.0e-41 172.6 184 48.9
Rhsim09G0060400 Rhododendron simsii HOM05D006987 ORTHO05D000525 9.8e-40 167.9 332 34.3
GSVIVG01021028001 Vitis vinifera HOM05D006987 ORTHO05D000525 1.4e-38 164.1 252 39.7
Zm00001eb088960 Zea mays HOM05D006987 ORTHO05D000525 5.9e-37 158.7 233 40.8
Os04g0129200 Oryza sativa ssp. japonica HOM05D006987 ORTHO05D000525 7.7e-37 158.3 233 40.3
MBI11_g28742_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 1.0e-36 157.9 216 43.5
FAN07G2928 Fragaria x ananassa HOM05D006987 ORTHO05D000525 1.3e-36 157.5 175 48.6
FAN17G1408 Fragaria x ananassa HOM05D006987 ORTHO05D000525 3.4e-32 142.9 193 42.5
Hma1.2p1_1286F.1_g273100 Hydrangea macrophylla HOM05D006987 ORTHO05D000525 1.7e-31 140.6 109 58.7
Pp3c12_4220 Physcomitrium patens HOM05D006987 ORTHO05D000525 4.9e-31 139.0 223 39.0
SMO144G0025 Selaginella moellendorffii HOM05D006987 ORTHO05D000525 1.8e-30 137.1 222 38.3
Atru.chr4.1579 Acer truncatum HOM05D006987 ORTHO05D000525 4.1e-30 136.0 190 43.2
PGR083G1328 Punica granatum HOM05D006987 ORTHO05D000525 1.6e-29 134.0 192 41.1
Oeu034321.1 Olea europaea HOM05D006987 ORTHO05D000525 5.0e-28 129.0 181 40.9
Nn3g20082 Nelumbo nucifera HOM05D006987 ORTHO05D000525 7.3e-27 125.2 189 42.3
SGA_v2.0_scaffold19G08780 Striga asiatica HOM05D006987 ORTHO05D000525 2.0e-24 117.1 181 39.2
CBR_g965 Chara braunii HOM05D006987 ORTHO05D000525 5.8e-24 115.5 251 31.9
MBI18_g30011_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 2.8e-18 96.7 70 68.6
COL.COLO4_20228 Corchorus olitorius HOM05D006987 ORTHO05D000525 8.0e-18 95.1 207 35.7
Ah.04g149380 Amaranthus hybridus HOM05D006987 ORTHO05D000525 1.4e-14 84.3 58 69.0
Potri.001G320201 Populus trichocarpa HOM05D006987 ORTHO05D000525 2.4e-14 83.6 183 33.3
unitig_0.g739 Utricularia gibba HOM05D000527 ORTHO05D000559 7.1e-14 82.0 69 52.2
MCO02G498 Micromonas commoda HOM05D006987 ORTHO05D000525 2.3e-12 77.0 236 27.1
FAN07G1638 Fragaria x ananassa HOM05D006987 ORTHO05D000525 4.3e-11 72.8 60 53.3
AT4G13885 Arabidopsis thaliana HOM05D006987 ORTHO05D000525 2.1e-10 70.5 44 68.2
TPR.G1581 Trifolium pratense HOM05D000886 ORTHO05D000525 1.4e-09 67.8 187 26.7
Nn7g36495 Nelumbo nucifera HOM05D000886 ORTHO05D000525 3.1e-09 66.6 203 26.6
Aqoxy2G02684 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 6.8e-09 65.5 198 29.3
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 6.8e-09 65.5 177 27.7
ECA232G0318 Erigeron canadensis HOM05D000886 ORTHO05D000525 8.9e-09 65.1 195 27.7
Lsat_1_v5_gn_5_161580 Lactuca sativa HOM05D000886 ORTHO05D000525 8.9e-09 65.1 215 26.0
Phvul.008G111200 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 8.9e-09 65.1 179 28.5
Aqoxy2G02678 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 2.0e-08 63.9 198 25.8
TAR374G1684 Trochodendron aralioides HOM05D000886 ORTHO05D000525 2.0e-08 63.9 197 27.4
Lj1P1081T21 Lonicera japonica HOM05D000886 ORTHO05D000525 4.4e-08 62.8 207 28.0
MD12G1053400 Malus domestica HOM05D000886 ORTHO05D000525 4.4e-08 62.8 188 27.1
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 4.4e-08 62.8 215 27.0
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 4.4e-08 62.8 213 24.4
Ca_09162_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 5.8e-08 62.4 215 27.0
HanXRQChr16g0528461 Helianthus annuus HOM05D000886 ORTHO05D000525 7.6e-08 62.0 179 27.4
Glyma.07G143200 Glycine max HOM05D000886 ORTHO05D000525 9.9e-08 61.6 178 27.0
TPR.G1548 Trifolium pratense HOM05D000292 ORTHO05D000172 9.9e-08 61.6 177 27.1
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.3e-07 61.2 196 26.5
VMungo0647G0937 Vigna mungo HOM05D000886 ORTHO05D000525 1.3e-07 61.2 177 28.2
Lsat_1_v5_gn_5_161560 Lactuca sativa HOM05D000886 ORTHO05D000525 1.7e-07 60.8 193 26.9
MD14G1051900 Malus domestica HOM05D000886 ORTHO05D000525 1.7e-07 60.8 183 28.4
Sopen12g031440 Solanum pennellii HOM05D000886 ORTHO05D000525 2.2e-07 60.5 193 25.4
MBI18_g35538_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 2.9e-07 60.1 178 26.4
Hma1.2p1_1283F.1_g272790 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 3.7e-07 59.7 186 26.9
PGSC0003DMG400029410 Solanum tuberosum HOM05D000886 ORTHO05D000525 3.7e-07 59.7 193 25.4
Zm00001eb157800 Zea mays HOM05D000886 ORTHO05D000525 3.7e-07 59.7 183 24.0
Ca_09164_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 4.9e-07 59.3 176 28.4
COL.COLO4_23199 Corchorus olitorius HOM05D000886 ORTHO05D000525 4.9e-07 59.3 214 24.3
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.9e-07 59.3 196 26.0
Prupe.7G019000 Prunus persica HOM05D000886 ORTHO05D000525 4.9e-07 59.3 177 28.8
Psat3g135480 Pisum sativum HOM05D000886 ORTHO05D000525 6.4e-07 58.9 175 26.9
TWI53G1169 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 6.4e-07 58.9 184 26.6
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 8.3e-07 58.5 200 26.5
PSO017G0226 Papaver somniferum HOM05D000886 ORTHO05D000525 8.3e-07 58.5 217 24.9
PSO017G3305 Papaver somniferum HOM05D000886 ORTHO05D000525 8.3e-07 58.5 217 24.9
AagrBONN_evm.TU.Sc2ySwM_344.2831 Anthoceros agrestis HOM05D000886 ORTHO05D000525 1.1e-06 58.2 205 24.9
CAN.G208.12 Capsicum annuum HOM05D000886 ORTHO05D000525 1.1e-06 58.2 179 26.3
Glyma.07G143700 Glycine max HOM05D000886 ORTHO05D000525 1.1e-06 58.2 189 26.5
HanXRQChr15g0495501 Helianthus annuus HOM05D000886 ORTHO05D000525 1.1e-06 58.2 197 26.9
HanXRQChr15g0495511 Helianthus annuus HOM05D000886 ORTHO05D000525 1.1e-06 58.2 200 27.0
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 1.4e-06 57.8 196 25.5
Oeu038044.1 Olea europaea HOM05D000886 ORTHO05D000525 1.4e-06 57.8 180 27.8
Sopen01g044180 Solanum pennellii HOM05D000886 ORTHO05D000525 1.4e-06 57.8 215 26.0
CANSAT56G3075 Cannabis sativa HOM05D000886 ORTHO05D000525 2.4e-06 57.0 195 24.1
Lj5P282T58 Lonicera japonica HOM05D000886 ORTHO05D000525 2.4e-06 57.0 215 25.6
PGSC0003DMG400043401 Solanum tuberosum HOM05D000886 ORTHO05D000525 2.4e-06 57.0 215 24.7
Cfa016272 Carpinus fangiana HOM05D000886 ORTHO05D000525 3.2e-06 56.6 204 25.5
EL10Ac3g07294 Beta vulgaris HOM05D000886 ORTHO05D000525 4.1e-06 56.2 196 28.6
Lj1g0021355 Lotus japonicus HOM05D000886 ORTHO05D000525 4.1e-06 56.2 215 25.1
Pp3c2_23990 Physcomitrium patens HOM05D000886 ORTHO05D000525 4.1e-06 56.2 190 27.4
HPP92_001070 Vanilla planifolia HOM05D005361 ORTHO05D006518 4.1e-06 56.2 199 27.6
Migut.K00159 Erythranthe guttata HOM05D000886 ORTHO05D000525 5.4e-06 55.8 191 23.6
Peaxi162Scf00069g00011 Petunia axillaris HOM05D000886 ORTHO05D000525 5.4e-06 55.8 184 27.2
Psat3g135080 Pisum sativum HOM05D000886 ORTHO05D000525 5.4e-06 55.8 197 27.9
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 5.4e-06 55.8 191 26.7
CDE12G0614 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 7.1e-06 55.5 192 25.5
Glyma.18G194300 Glycine max HOM05D000886 ORTHO05D000525 7.1e-06 55.5 193 26.4
Nitab4.5_0006171g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.1e-06 55.5 213 25.4
Solyc01g100670.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 7.1e-06 55.5 186 28.5
CAN.G809.12 Capsicum annuum HOM05D000886 ORTHO05D000525 9.2e-06 55.1 195 22.1
Nitab4.5_0003694g0040 Nicotiana tabacum HOM05D000886 ORTHO05D000525 9.2e-06 55.1 217 28.1
RcHm_v2.0_Chr5g0073181 Rosa chinensis HOM05D000886 ORTHO05D000525 9.2e-06 55.1 213 27.2
SalBow1G2078 Salvia bowleyana HOM05D000886 ORTHO05D000525 9.2e-06 55.1 191 25.7
SEGI_06833 Sequoiadendron giganteum HOM05D006987 ORTHO05D000525 9.2e-06 55.1 47 53.2


User provided reference genes

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