Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g100120 Pisum sativum HOM05D004184 ORTHO05D004863 5.6e-36 153.7 74 100.0
TPR.G25376 Trifolium pratense HOM05D004184 ORTHO05D004863 5.6e-36 153.7 74 100.0
arahy.Tifrunner.gnm1.ann1.AT8ALT Arachis hypogaea HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
arahy.Tifrunner.gnm1.ann1.D4REW6 Arachis hypogaea HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
arahy.Tifrunner.gnm1.ann1.JTH4ZG Arachis hypogaea HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Ca_16404_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Ca_16412_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Migut.D02230 Erythranthe guttata HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Glyma.13G221100 Glycine max HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Glyma.15G091400 Glycine max HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Lalb_Chr15g0086671 Lupinus albus HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Phvul.006G167900 Phaseolus vulgaris HOM05D004184 ORTHO05D004863 1.2e-35 152.5 74 98.6
Duzib106G2042 Durio zibethinus HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Duzib114G0898 Durio zibethinus HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Gohir.A06G167700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Gohir.D06G175000 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Gohir.D06G175100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Gorai.010G205400 Gossypium raimondii HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
Gorai.010G205500 Gossypium raimondii HOM05D004184 ORTHO05D004863 1.6e-35 152.1 74 97.3
arahy.Tifrunner.gnm1.ann1.R2A6R9 Arachis hypogaea HOM05D004184 ORTHO05D004863 2.8e-35 151.4 74 97.3
Cfa011309 Carpinus fangiana HOM05D004184 ORTHO05D004863 2.8e-35 151.4 74 97.3
Potri.010G223100 Populus trichocarpa HOM05D004184 ORTHO05D004863 2.8e-35 151.4 74 97.3
Gohir.D08G216100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.6e-35 151.0 74 97.3
Gorai.004G230000 Gossypium raimondii HOM05D004184 ORTHO05D004863 3.6e-35 151.0 74 97.3
Nn3g19559 Nelumbo nucifera HOM05D004184 ORTHO05D004863 3.6e-35 151.0 74 97.3
Thecc.10G075300 Theobroma cacao HOM05D004184 ORTHO05D004863 3.6e-35 151.0 74 95.9
ECA238G0827 Erigeron canadensis HOM05D004184 ORTHO05D004863 4.7e-35 150.6 74 97.3
Migut.N02593 Erythranthe guttata HOM05D004184 ORTHO05D004863 4.7e-35 150.6 74 97.3
Lalb_Chr18g0055181 Lupinus albus HOM05D004184 ORTHO05D004863 4.7e-35 150.6 74 97.3
Oeu056307.1 Olea europaea HOM05D004184 ORTHO05D004863 4.7e-35 150.6 74 97.3
TAR369G0716 Trochodendron aralioides HOM05D004184 ORTHO05D004863 4.7e-35 150.6 74 97.3
CSS0014649 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 95.9
DCAR_018804 Daucus carota HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 95.9
DCAR_019101 Daucus carota HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 97.3
Rhsim03G0120100 Rhododendron simsii HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 95.9
Rhsim09G0151300 Rhododendron simsii HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 95.9
vmacro04867 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 6.2e-35 150.2 74 95.9
Manes.08G007500 Manihot esculenta HOM05D004184 ORTHO05D004863 8.1e-35 149.8 74 94.6
Manes.09G068300 Manihot esculenta HOM05D004184 ORTHO05D004863 8.1e-35 149.8 74 94.6
Duzib128G1839 Durio zibethinus HOM05D004184 ORTHO05D004863 1.1e-34 149.4 74 94.6
Gohir.A08G198700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.1e-34 149.4 74 95.9
PGR142G3512 Punica granatum HOM05D004184 ORTHO05D004863 1.1e-34 149.4 74 95.9
TAR623G0434 Trochodendron aralioides HOM05D004184 ORTHO05D004863 1.1e-34 149.4 74 95.9
ATR0665G147 Amborella trichopoda HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
AT5G42300 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
arahy.Tifrunner.gnm1.ann1.97XRIQ Arachis hypogaea HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 97.3
EL10Ac6g13388 Beta vulgaris HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
EL10Ac6g15231 Beta vulgaris HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
EL10Ac9g22532 Beta vulgaris HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
CARHR284900 Cardamine hirsuta HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
CiPaw.13G114000 Carya illinoinensis HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Cc01_g11050 Coffea canephora HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Eucgr.J00924 Eucalyptus grandis HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Lj3g0017390 Lotus japonicus HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Oeu013466.1 Olea europaea HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Potri.004G211600 Populus trichocarpa HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Prupe.6G102700 Prunus persica HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
THA.LOC109117042 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
THA.LOC109117094 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.4e-34 149.1 74 95.9
Atru.chr12.761 Acer truncatum HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 95.9
Atru.chr12.785 Acer truncatum HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 95.9
AagrBONN_evm.TU.Sc2ySwM_369.241 Anthoceros agrestis HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 95.9
CSS0007140 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 94.6
CSS0037040 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 94.6
FvH4_3g32020 Fragaria vesca HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 94.6
HanXRQChr14g0452711 Helianthus annuus HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 95.9
Medtr3g084140 Medicago truncatula HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 97.3
Sabra10G0172500 Salix brachista HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 94.6
Sc20g0001810 Simmondsia chinensis HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 94.6
TPR.G11596 Trifolium pratense HOM05D004184 ORTHO05D004863 1.8e-34 148.7 74 95.9
Atru.chr3.3614 Acer truncatum HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 94.6
Ah.13g077000 Amaranthus hybridus HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 94.6
FvH4_6g15950 Fragaria vesca HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
FAN02G3659 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
FAN05G1209 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
FAN09G4380 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
FAN14G0292 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
Potri.008G039100 Populus trichocarpa HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 94.6
RcHm_v2.0_Chr3g0469651 Rosa chinensis HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 93.2
TWI53G0713 Tripterygium wilfordii HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 95.9
HPP92_005153 Vanilla planifolia HOM05D004184 ORTHO05D004863 2.4e-34 148.3 74 94.6
Ah.02g113080 Amaranthus hybridus HOM05D004184 ORTHO05D004863 3.1e-34 147.9 74 94.6
CANSAT56G0757 Cannabis sativa HOM05D004184 ORTHO05D004863 3.1e-34 147.9 74 94.6
CANSAT56G3079 Cannabis sativa HOM05D004184 ORTHO05D004863 3.1e-34 147.9 74 94.6
CsaV3_6G036470 Cucumis sativus L. HOM05D004184 ORTHO05D004863 3.1e-34 147.9 74 94.6
AL8G19320 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
BcaB04g20523 Brassica carinata HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
BcaC09g49169 Brassica carinata HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
A01p32830 Brassica napus HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
C01p41920 Brassica napus HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
BolC1t04148H Brassica oleracea HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
BraA01t03406Z Brassica rapa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
CANSAT56G0430 Cannabis sativa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
CANSAT56G0833 Cannabis sativa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
Carub.0008s0690 Capsella rubella HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
CAN.G219.65 Capsicum annuum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
Cpa.g.sc53.87 Carica papaya HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
AUR62024961 Chenopodium quinoa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 95.9
AUR62042195 Chenopodium quinoa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 95.9
ClCG01G013620 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
ClCG08G007540 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
COL.COLO4_18323 Corchorus olitorius HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
MELO3C019800.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
MELO3C035361.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Lsat_1_v5_gn_2_112360 Lactuca sativa HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 95.9
Nn2g10813 Nelumbo nucifera HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Nn2g13109 Nelumbo nucifera HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Nitab4.5_0000707g0150 Nicotiana tabacum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
Nitab4.5_0004053g0030 Nicotiana tabacum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
PSO063G1298 Papaver somniferum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
PSO339G3297 Papaver somniferum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
PSO384G0873 Papaver somniferum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
QL01p021954 Quercus lobata HOM05D004184 ORTHO05D004863 4.0e-34 147.5 73 94.5
Sp7g08300 Schrenkiella parvula HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Sed0000683 Sechium edule HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Sed0011709 Sechium edule HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 94.6
Solyc01g087620.3 Solanum lycopersicum HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
Sopen01g034590 Solanum pennellii HOM05D004184 ORTHO05D004863 4.0e-34 147.5 74 93.2
Ciclev10033494m.g Citrus clementina HOM05D004184 ORTHO05D004863 5.2e-34 147.1 74 94.6
MD03G1119300 Malus domestica HOM05D004184 ORTHO05D004863 5.2e-34 147.1 74 94.6
Manes.11G146400 Manihot esculenta HOM05D004184 ORTHO05D004863 5.2e-34 147.1 74 93.2
Duzib170G0173 Durio zibethinus HOM05D004184 ORTHO05D004863 6.8e-34 146.7 74 93.2
FAN25G3531 Fragaria x ananassa HOM05D004184 ORTHO05D004863 6.8e-34 146.7 74 93.2
Os12g0143100 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 6.8e-34 146.7 74 94.6
Aa31LG9G12410 Aethionema arabicum HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 93.2
AL5G23710 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 94.6
CBR_g26311 Chara braunii HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 94.6
AUR62035681 Chenopodium quinoa HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 94.6
Cre17.g725050 Chlamydomonas reinhardtii HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 94.6
MD04G1097200 Malus domestica HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 91.9
MD12G1118400 Malus domestica HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 91.9
Pp3c3_27450 Physcomitrium patens HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 94.6
Prupe.6G236300 Prunus persica HOM05D004184 ORTHO05D004863 8.9e-34 146.4 74 91.9
QL07p044373 Quercus lobata HOM05D004184 ORTHO05D004863 8.9e-34 146.4 72 95.8
BcaB02g08018 Brassica carinata HOM05D004184 ORTHO05D004863 1.2e-33 146.0 74 93.2
Mapoly0159s0011 Marchantia polymorpha HOM05D004184 ORTHO05D004863 1.2e-33 146.0 74 94.6
Thecc.09G341900 Theobroma cacao HOM05D004184 ORTHO05D004863 1.2e-33 146.0 74 93.2
HPP92_028504 Vanilla planifolia HOM05D004184 ORTHO05D004863 1.2e-33 146.0 74 95.9
Cpa.g.sc65.3 Carica papaya HOM05D004184 ORTHO05D004863 1.5e-33 145.6 74 93.2
Thhalv10002757m.g Eutrema salsugineum HOM05D004184 ORTHO05D004863 1.5e-33 145.6 74 93.2
FAN11G0673 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.5e-33 145.6 74 93.2
Os11g0145400 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 1.5e-33 145.6 74 93.2
PSO339G1327 Papaver somniferum HOM05D004184 ORTHO05D004863 1.5e-33 145.6 73 94.5
Os02g0628800 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 3.4e-33 144.4 74 93.2
Mapoly0065s0096 Marchantia polymorpha HOM05D004184 ORTHO05D004863 5.8e-33 143.7 74 91.9
MCO15G432 Micromonas commoda HOM05D004184 ORTHO05D004863 7.6e-33 143.3 74 89.2
AT3G45180 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 2.2e-32 141.7 74 90.5
SMO347G0051 Selaginella moellendorffii HOM05D004184 ORTHO05D004863 6.4e-32 140.2 74 90.5
QL07p044403 Quercus lobata HOM05D004184 ORTHO05D004863 1.1e-31 139.4 73 91.8
FAN16G0267 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.2e-30 136.0 74 91.9
HanXRQChr16g0532931 Helianthus annuus HOM05D004184 ORTHO05D004863 7.8e-30 133.3 65 96.9
CDE06G0371 Ceratophyllum demersum HOM05D004184 ORTHO05D004863 5.1e-29 130.6 65 93.8
FAN02G1153 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.8e-26 122.1 61 93.4
Sc15g0001480 Simmondsia chinensis HOM05D004184 ORTHO05D004863 2.4e-26 121.7 62 91.9
CARHR150790 Cardamine hirsuta HOM05D004184 ORTHO05D004863 4.0e-26 120.9 61 90.2
arahy.Tifrunner.gnm1.ann1.M3R4HC Arachis hypogaea HOM05D004184 ORTHO05D004863 5.3e-26 120.6 74 82.4
Cpa.g.sc3.475 Carica papaya HOM05D004184 ORTHO05D004863 1.2e-25 119.4 74 75.7
vmacro07069 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 6.2e-19 97.1 50 94.0
MBI10_g21920_MAGBIO Magnolia biondii HOM05D004184 ORTHO05D004863 8.1e-19 96.7 47 100.0
Sabra08G0026800 Salix brachista HOM05D004184 ORTHO05D004863 4.0e-18 94.4 47 95.7
Actinidia06768 Actinidia chinensis HOM05D004184 ORTHO05D004863 1.2e-17 92.8 58 84.5
SEGI_23705 Sequoiadendron giganteum HOM05D004184 ORTHO05D004863 2.0e-17 92.0 47 93.6
Lsat_1_v5_gn_1_64121 Lactuca sativa HOM05D004184 ORTHO05D004863 4.5e-17 90.9 46 97.8
CsaV3_1G014010 Cucumis sativus L. HOM05D004184 ORTHO05D004863 1.7e-16 89.0 50 86.0
Gohir.A10G205366 Gossypium hirsutum HOM05D004184 ORTHO05D004863 2.9e-16 88.2 46 95.7
Peaxi162Scf00694g00018 Petunia axillaris HOM05D004184 ORTHO05D004863 2.4e-15 85.1 44 93.2
Nitab4.5_0009422g0020 Nicotiana tabacum HOM05D004184 ORTHO05D004863 1.3e-13 79.3 77 58.4
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 2.3e-13 78.6 44 84.1
Atru.chr2.1290 Acer truncatum HOM05D004184 ORTHO05D004863 3.8e-08 61.2 46 69.6


User provided reference genes

Program Settings