Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.2e-235 818.5 407 100.0
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.8e-185 652.1 426 77.9
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.8e-183 643.7 427 78.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.6e-169 598.6 419 72.8
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 7.3e-162 574.3 431 70.8
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 7.6e-151 537.7 417 67.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 3.2e-149 532.3 417 66.9
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.0e-147 525.8 424 64.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 6.6e-147 524.6 348 76.4
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.9e-146 523.1 426 65.0
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 4.0e-144 515.4 426 64.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.4e-141 506.9 426 61.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.9e-140 501.1 426 60.6
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 8.1e-137 491.1 397 66.0
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.0e-126 457.6 419 58.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.9e-125 453.4 419 58.7
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.5e-119 433.7 401 58.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.0e-118 431.0 405 56.8
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-118 430.3 439 53.8
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.7e-118 430.3 407 57.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 9.4e-117 424.5 421 53.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 2.1e-116 423.3 463 50.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.6e-116 422.2 405 55.6
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.6e-116 422.2 298 68.1
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.6e-116 422.2 383 58.2
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.0e-115 421.0 405 55.8
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.0e-115 419.5 405 55.1
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.0e-115 419.5 409 57.0
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 3.9e-115 419.1 402 56.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.8e-115 417.9 403 55.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-114 417.5 405 55.1
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 4.3e-114 415.6 413 55.9
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.7e-113 413.7 401 57.1
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.8e-113 412.9 400 56.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.8e-113 412.9 424 52.6
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.8e-113 412.1 402 55.5
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-112 410.6 405 55.8
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.8e-112 410.2 401 55.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 4.1e-112 409.1 401 55.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 9.1e-112 407.9 385 56.6
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.5e-111 407.1 401 55.4
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.5e-111 405.6 422 51.9
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.9e-111 405.2 427 53.6
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 5.0e-110 402.1 406 52.5
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-109 401.0 385 55.6
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.1e-109 401.0 417 54.0
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 2.5e-109 399.8 408 54.4
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 2.5e-109 399.8 403 54.8
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.2e-109 399.1 410 53.7
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.9e-107 392.5 395 55.4
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 6.7e-107 391.7 405 54.1
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 8.8e-107 391.3 395 53.7
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 3.3e-106 389.4 375 54.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 5.7e-106 388.7 375 54.9
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 2.8e-105 386.3 383 54.8
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.3e-105 385.2 387 54.0
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.4e-104 384.0 393 52.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.8e-104 383.6 439 50.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 2.6e-103 379.8 424 51.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 3.5e-103 379.4 389 53.7
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.5e-103 379.0 491 45.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 5.9e-103 378.6 400 54.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 5.0e-102 375.6 389 54.5
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 5.0e-102 375.6 406 52.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.4e-101 374.0 390 53.8
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.4e-101 374.0 401 52.4
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.9e-101 373.6 389 54.5
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.9e-101 373.6 389 54.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.2e-101 372.9 392 54.1
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 5.5e-101 372.1 389 54.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 5.5e-101 372.1 389 54.0
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 9.4e-101 371.3 392 53.3
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.1e-100 370.2 271 66.1
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.8e-99 367.1 393 52.7
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.5e-98 364.0 391 52.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 2.6e-98 363.2 415 51.3
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.7e-97 360.5 385 51.9
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 6.3e-97 358.6 405 51.1
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.8e-96 357.1 391 51.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 4.1e-96 355.9 383 52.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.3e-96 355.5 388 49.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.6e-95 354.0 387 51.2
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 7.7e-95 351.7 426 47.4
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.3e-94 350.9 402 48.5
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.2e-94 350.1 415 47.5
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.2e-94 350.1 364 51.4
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.5e-93 347.4 384 50.3
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 5.5e-93 345.5 404 47.8
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 4.7e-92 342.4 383 50.7
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 6.1e-92 342.0 402 48.0
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 8.0e-92 341.7 390 49.7
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 8.8e-91 338.2 355 54.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-90 337.8 284 59.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.0e-90 337.0 407 48.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 3.3e-90 336.3 413 47.0
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.7e-90 335.5 422 47.9
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.3e-89 334.3 395 49.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.8e-89 333.2 424 46.7
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.8e-89 332.4 343 51.9
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.0e-88 328.6 412 47.1
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.5e-86 322.0 427 43.8
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.2e-85 319.3 427 43.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 6.1e-84 315.5 354 47.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.3e-81 305.1 449 43.2
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.7e-79 300.1 402 44.8
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 6.1e-76 288.9 296 51.4
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 6.8e-75 285.4 274 55.1
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-74 283.9 274 55.1
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.0e-74 283.9 274 55.1
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.3e-73 281.2 277 54.5
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-73 280.8 277 54.5
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 8.6e-70 268.5 306 48.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.2e-68 264.6 297 46.8
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.2e-64 250.0 292 50.0
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.2e-64 250.0 289 49.1
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 5.4e-64 249.2 304 46.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 7.0e-64 248.8 318 46.9
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.3e-62 244.6 324 46.0
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.2e-60 238.0 268 45.9
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.9e-54 216.5 277 43.7
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 5.1e-54 216.1 355 41.7
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.1e-53 214.9 325 39.4
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.6e-52 211.1 167 61.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.2e-49 200.7 188 54.3
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.3e-46 191.4 313 39.3
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-46 190.3 244 45.5
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-43 181.8 126 68.3
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 2.4e-43 180.6 254 44.9
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 9.9e-42 175.3 280 39.6
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 8.4e-41 172.2 129 63.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.2e-39 168.3 142 59.9
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.7e-39 167.2 261 37.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 3.9e-38 163.3 281 36.3
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.4e-33 146.0 97 67.0
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-32 145.2 101 67.3
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.9e-29 134.4 98 63.3
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.5e-29 134.0 213 40.8
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.1e-28 131.0 213 40.8
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 8.1e-28 129.0 186 43.0
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 9.9e-26 122.1 68 79.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 4.2e-24 116.7 103 55.3
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.3e-22 110.9 202 41.1
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 5.1e-22 109.8 266 28.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 4.3e-21 106.7 222 37.4
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 5.6e-21 106.3 57 82.5
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 2.8e-20 104.0 172 37.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 5.3e-19 99.8 61 70.5
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.4e-18 97.1 127 45.7
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-17 94.7 51 76.5
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-17 93.2 63 60.3
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-14 85.1 68 52.9
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.4e-13 79.3 113 43.4
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.6e-13 79.0 167 34.1
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-12 76.3 52 55.8
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.8e-09 67.0 63 50.8
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.2e-08 63.5 53 52.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.3e-08 62.4 68 41.2
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.3e-06 57.8 71 43.7
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 6.7e-06 56.2 127 37.0


User provided reference genes

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