Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 1.7e-84 315.8 145 100.0
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.5e-40 169.9 115 71.3
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 3.3e-40 168.7 115 70.4
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 3.3e-40 168.7 115 70.4
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 9.6e-40 167.2 115 69.6
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 3.6e-39 165.2 115 68.7
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.8e-39 164.9 115 68.7
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 8.1e-39 164.1 115 68.7
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 8.1e-39 164.1 115 67.8
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 1.8e-38 162.9 115 67.0
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 5.3e-38 161.4 115 67.0
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 1.3e-36 156.8 115 66.1
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.2e-36 156.0 115 64.3
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 8.4e-36 154.1 115 66.1
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 2.4e-35 152.5 115 62.6
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.4e-35 151.4 115 62.6
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 5.4e-35 151.4 114 63.2
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 7.1e-35 151.0 115 62.6
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 7.1e-35 151.0 115 61.7
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 7.1e-35 151.0 114 64.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 1.2e-34 150.2 115 61.7
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 2.1e-34 149.4 115 61.7
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 2.7e-34 149.1 115 62.6
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 3.5e-34 148.7 115 62.6
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 3.5e-34 148.7 112 64.3
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 3.5e-34 148.7 114 61.4
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 4.6e-34 148.3 115 62.6
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 6.0e-34 147.9 121 57.9
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 7.9e-34 147.5 116 62.1
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 7.9e-34 147.5 115 60.9
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 7.9e-34 147.5 115 61.7
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 7.9e-34 147.5 115 61.7
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 7.9e-34 147.5 112 62.5
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.0e-33 147.1 115 60.0
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 1.3e-33 146.7 115 61.7
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 1.3e-33 146.7 115 61.7
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 1.8e-33 146.4 115 62.6
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 1.8e-33 146.4 115 60.9
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 3.0e-33 145.6 115 60.0
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 3.9e-33 145.2 116 60.3
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 5.1e-33 144.8 115 60.9
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 5.1e-33 144.8 114 64.0
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 6.7e-33 144.4 115 59.1
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 6.7e-33 144.4 115 59.1
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 6.7e-33 144.4 115 60.9
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 8.7e-33 144.1 115 60.9
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 8.7e-33 144.1 115 59.1
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 8.7e-33 144.1 115 59.1
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 1.1e-32 143.7 115 57.4
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 1.1e-32 143.7 113 60.2
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 1.9e-32 142.9 115 60.0
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 3.3e-32 142.1 112 61.6
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.3e-32 141.7 121 56.2
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 5.6e-32 141.4 125 56.8
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 7.4e-32 141.0 111 60.4
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 7.4e-32 141.0 115 60.0
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 7.4e-32 141.0 115 58.3
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 7.4e-32 141.0 115 60.0
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 9.6e-32 140.6 115 58.3
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 1.3e-31 140.2 115 58.3
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 1.6e-31 139.8 113 60.2
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.6e-31 139.8 115 60.0
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.6e-31 139.8 115 60.0
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 2.1e-31 139.4 115 56.5
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 2.8e-31 139.0 113 58.4
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 2.8e-31 139.0 115 58.3
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 2.8e-31 139.0 115 58.3
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 3.7e-31 138.7 115 58.3
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 3.7e-31 138.7 113 59.3
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 3.7e-31 138.7 113 59.3
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 4.8e-31 138.3 115 59.1
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 4.8e-31 138.3 113 59.3
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 6.2e-31 137.9 116 59.5
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.1e-30 137.1 114 58.8
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.4e-30 136.7 113 57.5
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 1.4e-30 136.7 115 56.5
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 1.4e-30 136.7 117 57.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.8e-30 136.3 113 57.5
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.8e-30 136.3 116 56.0
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 3.1e-30 135.6 113 58.4
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 3.1e-30 135.6 114 57.9
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 3.1e-30 135.6 117 56.4
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 5.3e-30 134.8 112 57.1
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 9.0e-30 134.0 118 53.4
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 9.0e-30 134.0 117 55.6
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 2.0e-29 132.9 115 56.5
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.6e-29 132.5 115 57.4
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 1.3e-28 130.2 115 54.8
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 1.7e-28 129.8 114 55.3
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 1.7e-28 129.8 114 55.3
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 8.4e-28 127.5 115 53.0
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 1.4e-27 126.7 115 56.5
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.9e-27 126.3 111 55.9
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 3.2e-27 125.6 112 51.8
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 4.2e-27 125.2 115 53.9
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 5.5e-27 124.8 114 53.5
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 3.0e-25 119.0 112 54.5
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 3.9e-25 118.6 115 53.9
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 6.7e-25 117.9 112 52.7
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 1.9e-24 116.3 112 51.8
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 8.2e-23 110.9 69 71.0
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 1.8e-22 109.8 111 48.6
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 5.8e-21 104.8 95 55.8
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 9.3e-19 97.4 96 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 1.2e-13 80.5 104 37.5
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 1.5e-13 80.1 107 38.3
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 1.3e-12 77.0 109 36.7
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 8.5e-12 74.3 69 55.1
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.5e-11 71.6 69 53.6
FAN13G2134 Fragaria x ananassa HOM05D042856 ORTHO05D035334 2.1e-10 69.7 115 36.5
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 3.6e-10 68.9 69 55.1
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 7.9e-10 67.8 115 33.9
FAN13G2618 Fragaria x ananassa HOM05D000100 ORTHO05D035334 1.0e-09 67.4 118 35.6
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 2.3e-09 66.2 93 34.4
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 6.7e-09 64.7 69 47.8
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 6.7e-09 64.7 69 47.8
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 6.7e-09 64.7 69 47.8
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 3.3e-08 62.4 68 48.5
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 1.1e-06 57.4 88 38.6
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 1.4e-06 57.0 69 43.5


User provided reference genes

Program Settings