Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 2.3e-79 298.9 155 100.0
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 9.3e-33 144.1 138 63.8
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 1.0e-31 140.6 138 61.6
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 5.6e-30 134.8 138 59.4
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 1.1e-28 130.6 138 57.2
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 5.3e-28 128.3 138 55.8
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 1.5e-27 126.7 138 55.1
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 4.5e-27 125.2 138 51.4
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 4.5e-27 125.2 138 51.4
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 2.9e-26 122.5 136 52.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.9e-25 119.8 137 54.0
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 4.2e-25 118.6 138 52.2
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 7.9e-24 114.4 138 49.3
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 1.8e-23 113.2 143 46.9
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 6.7e-23 111.3 138 47.8
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 6.7e-23 111.3 137 50.4
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 3.3e-22 109.0 138 46.4
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 7.4e-22 107.8 138 47.8
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 2.1e-21 106.3 136 45.6
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 2.8e-21 105.9 138 46.4
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 2.8e-21 105.9 137 45.3
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 4.8e-21 105.1 138 45.7
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 4.8e-21 105.1 137 44.5
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.8e-21 105.1 137 46.0
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 6.2e-21 104.8 138 45.7
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 6.2e-21 104.8 138 45.7
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 6.2e-21 104.8 138 46.4
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 6.2e-21 104.8 136 44.9
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 8.2e-21 104.4 137 45.3
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 8.2e-21 104.4 137 45.3
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 8.2e-21 104.4 137 45.3
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 1.1e-20 104.0 132 52.3
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.1e-20 104.0 149 44.3
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 1.1e-20 104.0 139 47.5
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.4e-20 103.6 138 47.1
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 1.4e-20 103.6 138 46.4
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 1.8e-20 103.2 137 46.7
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 1.8e-20 103.2 138 44.9
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 1.8e-20 103.2 138 44.9
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.8e-20 103.2 137 45.3
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.4e-20 102.8 136 47.1
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 4.0e-20 102.1 137 46.0
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 5.3e-20 101.7 138 44.9
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 6.9e-20 101.3 137 45.3
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 9.0e-20 100.9 137 46.0
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 1.2e-19 100.5 137 45.3
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.2e-19 100.5 147 42.9
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 1.2e-19 100.5 140 46.4
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 2.6e-19 99.4 145 43.4
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 2.6e-19 99.4 138 43.5
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 3.4e-19 99.0 137 46.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 4.5e-19 98.6 138 45.7
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 5.8e-19 98.2 137 45.3
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 5.8e-19 98.2 138 43.5
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 5.8e-19 98.2 138 43.5
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 5.8e-19 98.2 145 44.1
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 7.6e-19 97.8 138 42.8
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 1.3e-18 97.1 138 43.5
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.3e-18 97.1 147 41.5
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 1.3e-18 97.1 143 41.3
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 1.3e-18 97.1 140 47.1
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 2.2e-18 96.3 137 42.3
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 2.9e-18 95.9 139 43.9
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.9e-18 95.9 138 42.8
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 2.9e-18 95.9 148 43.2
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.8e-18 95.5 138 45.7
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 5.0e-18 95.1 139 42.4
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 5.0e-18 95.1 162 37.7
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 5.0e-18 95.1 132 43.9
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 8.4e-18 94.4 137 44.5
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 8.4e-18 94.4 147 42.9
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 1.1e-17 94.0 137 42.3
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 1.1e-17 94.0 148 42.6
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 4.2e-17 92.0 139 38.8
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 5.5e-17 91.7 138 41.3
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 5.5e-17 91.7 137 42.3
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 5.5e-17 91.7 139 41.7
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 7.1e-17 91.3 139 39.6
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 9.3e-17 90.9 137 42.3
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 1.2e-16 90.5 137 40.9
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 2.1e-16 89.7 141 40.4
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 3.5e-16 89.0 143 40.6
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 3.5e-16 89.0 133 42.9
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 7.9e-16 87.8 150 42.0
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 7.9e-16 87.8 143 42.0
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 7.9e-16 87.8 128 42.2
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.3e-15 87.0 137 40.1
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.3e-15 87.0 137 40.1
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 1.3e-15 87.0 139 38.1
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 3.9e-15 85.5 139 38.8
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 5.1e-15 85.1 137 40.9
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 5.1e-15 85.1 136 37.5
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 6.7e-15 84.7 151 39.1
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 1.5e-14 83.6 137 39.4
TPR.G32052 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-14 83.6 92 57.6
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 1.9e-14 83.2 186 34.9
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 3.3e-14 82.4 149 37.6
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 7.4e-14 81.3 137 38.0
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 7.4e-14 81.3 137 38.7
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 9.7e-14 80.9 137 38.7
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 2.2e-13 79.7 137 36.5
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 2.8e-13 79.3 144 37.5
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 2.8e-13 79.3 175 34.9
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 7.7e-11 71.2 142 36.6
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 5.0e-10 68.6 86 46.5
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 8.5e-10 67.8 62 59.7
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 8.5e-10 67.8 62 59.7
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.6e-08 63.5 91 40.7
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 4.6e-08 62.0 77 45.5
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 6.1e-08 61.6 111 36.0
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 5.1e-07 58.5 92 38.0
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 1.5e-06 57.0 117 34.2
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 2.5e-06 56.2 150 29.3
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 7.4e-06 54.7 107 35.5


User provided reference genes

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