Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24926 Trifolium pratense HOM05D001707 ORTHO05D001694 5.2e-57 225.3 252 100.0
Psat5g168800 Pisum sativum HOM05D001707 ORTHO05D001694 4.9e-23 112.5 198 67.7
Ca_22135_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 1.0e-20 104.8 208 74.0
Ca_30468_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 1.0e-20 104.8 208 74.0
Medtr3g058970 Medicago truncatula HOM05D001707 ORTHO05D001694 1.0e-20 104.8 198 62.6
Glyma.08G329100 Glycine max HOM05D001707 ORTHO05D001694 5.4e-14 82.4 86 54.7
Glyma.18G077700 Glycine max HOM05D001707 ORTHO05D001694 1.2e-13 81.3 86 58.1
Medtr5g095720 Medicago truncatula HOM05D001707 ORTHO05D001694 1.3e-12 77.8 86 53.5
Ca_06393_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 2.3e-12 77.0 90 53.3
Psat2g007560 Pisum sativum HOM05D001707 ORTHO05D001694 3.0e-12 76.6 84 79.8
arahy.Tifrunner.gnm1.ann1.A9Q4ZU Arachis hypogaea HOM05D001707 ORTHO05D001694 6.6e-12 75.5 84 57.1
arahy.Tifrunner.gnm1.ann1.706G3K Arachis hypogaea HOM05D001707 ORTHO05D001694 1.9e-11 73.9 84 50.0
Phvul.006G056800 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 1.9e-11 73.9 86 52.3
Lalb_Chr15g0082041 Lupinus albus HOM05D001707 ORTHO05D001694 7.3e-11 72.0 86 48.8
QL08p004228 Quercus lobata HOM05D001707 ORTHO05D001694 1.6e-10 70.9 90 50.0
VMungo0540G1466 Vigna mungo HOM05D001707 ORTHO05D001694 1.6e-10 70.9 86 50.0
Sc16g0008030 Simmondsia chinensis HOM05D001707 ORTHO05D001694 2.8e-10 70.1 86 48.8
AUR62036448 Chenopodium quinoa HOM05D001707 ORTHO05D001694 6.2e-10 68.9 44 77.3
FAN16G3081 Fragaria x ananassa HOM05D001707 ORTHO05D001694 8.1e-10 68.6 84 48.8
GSVIVG01014672001 Vitis vinifera HOM05D001707 ORTHO05D001694 1.1e-09 68.2 84 78.6
Ciclev10007691m.g Citrus clementina HOM05D001707 ORTHO05D001694 1.4e-09 67.8 86 47.7
FAN11G4026 Fragaria x ananassa HOM05D001707 ORTHO05D001694 1.8e-09 67.4 84 51.2
TPR.G8604 Trifolium pratense HOM05D001707 ORTHO05D001694 1.8e-09 67.4 86 47.7
FAN25G3697 Fragaria x ananassa HOM05D001707 ORTHO05D001694 2.3e-09 67.0 86 46.5
Dinv40853 Davidia involucrata HOM05D001707 ORTHO05D001694 3.1e-09 66.6 85 49.4
Cpa.g.sc12.152 Carica papaya HOM05D001707 ORTHO05D001694 4.0e-09 66.2 87 75.9
Lalb_Chr04g0247871 Lupinus albus HOM05D001707 ORTHO05D001694 5.2e-09 65.9 86 61.6
Phvul.006G056900 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 6.8e-09 65.5 107 62.6
EL10Ac4g07585 Beta vulgaris HOM05D001707 ORTHO05D001694 8.9e-09 65.1 101 69.3
MELO3C014102.2 Cucumis melo HOM05D001707 ORTHO05D001694 1.2e-08 64.7 85 47.1
Manes.15G060500 Manihot esculenta HOM05D001707 ORTHO05D001694 1.2e-08 64.7 84 45.2
FvH4_3g29362 Fragaria vesca HOM05D001707 ORTHO05D001694 1.5e-08 64.3 84 50.0
MBI16_g46682_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D001694 1.5e-08 64.3 84 46.4
MBI16_g47138_MAGBIO Magnolia biondii HOM05D001707 ORTHO05D001694 1.5e-08 64.3 84 46.4
Sabra16G0240600 Salix brachista HOM05D001707 ORTHO05D001694 1.5e-08 64.3 84 48.8
CsaV3_3G004070 Cucumis sativus L. HOM05D001707 ORTHO05D001694 2.6e-08 63.5 84 46.4
Hma1.2p1_1559F.1_g290640 Hydrangea macrophylla HOM05D001707 ORTHO05D001694 2.6e-08 63.5 88 48.9
CANSAT11G1471 Cannabis sativa HOM05D001707 ORTHO05D001694 3.4e-08 63.2 86 76.7
CiPaw.11G203300 Carya illinoinensis HOM05D001707 ORTHO05D001694 3.4e-08 63.2 84 44.0
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 3.4e-08 63.2 35 85.7
Manes.03G140900 Manihot esculenta HOM05D001707 ORTHO05D001694 3.4e-08 63.2 86 46.5
RcHm_v2.0_Chr5g0053741 Rosa chinensis HOM05D001707 ORTHO05D001694 5.8e-08 62.4 84 46.4
AUR62017093 Chenopodium quinoa HOM05D001707 ORTHO05D001694 7.6e-08 62.0 35 82.9
FAN21G0111 Fragaria x ananassa HOM05D001707 ORTHO05D001694 7.6e-08 62.0 84 42.9
VMungo0540G1473 Vigna mungo HOM05D001707 ORTHO05D001694 7.6e-08 62.0 107 57.0
Peaxi162Scf01164g00129 Petunia axillaris HOM05D001707 ORTHO05D001694 9.9e-08 61.6 35 82.9
CSS0006292 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 1.7e-07 60.8 37 81.1
Lalb_Chr17g0348941 Lupinus albus HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
Nitab4.5_0000461g0250 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
Nitab4.5_0006508g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
Rhsim04G0012800 Rhododendron simsii HOM05D001707 ORTHO05D001694 1.7e-07 60.8 37 81.1
Solyc07g065490.3 Solanum lycopersicum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
Sopen07g033700 Solanum pennellii HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
PGSC0003DMG400022282 Solanum tuberosum HOM05D001707 ORTHO05D001694 1.7e-07 60.8 33 84.8
Actinidia05012 Actinidia chinensis HOM05D001707 ORTHO05D001694 2.2e-07 60.5 86 45.3
HPP92_014029 Vanilla planifolia HOM05D001707 ORTHO05D001694 2.2e-07 60.5 84 44.0
MD11G1200600 Malus domestica HOM05D001707 ORTHO05D001694 2.9e-07 60.1 101 45.5
Actinidia35400 Actinidia chinensis HOM05D001707 ORTHO05D001694 3.7e-07 59.7 84 46.4
CSS0002645 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 3.7e-07 59.7 89 46.1
Nitab4.5_0005906g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 3.7e-07 59.7 87 43.7
Atru.chr2.3683 Acer truncatum HOM05D001707 ORTHO05D001694 4.9e-07 59.3 84 52.4
DCAR_017085 Daucus carota HOM05D001707 ORTHO05D001694 4.9e-07 59.3 33 84.8
Eucgr.F02052 Eucalyptus grandis HOM05D001707 ORTHO05D001694 4.9e-07 59.3 86 44.2
MBI19_g14894_MAGBIO Magnolia biondii HOM05D001707 ORTHO05D001694 4.9e-07 59.3 82 45.1
Potri.001G367400 Populus trichocarpa HOM05D001707 ORTHO05D001694 4.9e-07 59.3 31 90.3
Rhsim06G0229000 Rhododendron simsii HOM05D001707 ORTHO05D001694 4.9e-07 59.3 91 61.5
CAN.G337.4 Capsicum annuum HOM05D001707 ORTHO05D001694 6.4e-07 58.9 33 81.8
TWI38G0208 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 6.4e-07 58.9 35 85.7
Actinidia37156 Actinidia chinensis HOM05D001707 ORTHO05D001694 8.3e-07 58.5 31 87.1
MSTRG.13020 Avicennia marina HOM05D001707 ORTHO05D001694 8.3e-07 58.5 33 81.8
Glyma.08G329200 Glycine max HOM05D001707 ORTHO05D001694 8.3e-07 58.5 35 80.0
CiPaw.12G137800 Carya illinoinensis HOM05D001707 ORTHO05D001694 1.1e-06 58.2 87 43.7
Cfa020198 Carpinus fangiana HOM05D001707 ORTHO05D001694 1.4e-06 57.8 32 81.2
Lsat_1_v5_gn_5_1401 Lactuca sativa HOM05D001707 ORTHO05D001694 1.4e-06 57.8 33 75.8
Thecc.07G014600 Theobroma cacao HOM05D001707 ORTHO05D001694 1.4e-06 57.8 31 87.1
TWI38G1767 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 1.4e-06 57.8 36 80.6
LjContig00081g0007565 Lotus japonicus HOM05D001707 ORTHO05D001694 1.9e-06 57.4 86 47.7
MD03G1183500 Malus domestica HOM05D001707 ORTHO05D001694 1.9e-06 57.4 35 80.0
Sed0006520 Sechium edule HOM05D001707 ORTHO05D001694 1.9e-06 57.4 84 44.0
Solyc10g006000.4 Solanum lycopersicum HOM05D001707 ORTHO05D001694 1.9e-06 57.4 33 72.7
Sopen10g001960 Solanum pennellii HOM05D001707 ORTHO05D001694 1.9e-06 57.4 33 72.7
PGSC0003DMG401014410 Solanum tuberosum HOM05D001707 ORTHO05D001694 1.9e-06 57.4 33 72.7
TWI39G1172 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 1.9e-06 57.4 36 80.6
TAR626G0122 Trochodendron aralioides HOM05D001707 ORTHO05D001694 1.9e-06 57.4 84 54.8
CDE05G1523 Ceratophyllum demersum HOM05D001707 ORTHO05D001694 2.4e-06 57.0 33 81.8
Haze_09817 Corylus avellana HOM05D001707 ORTHO05D001694 2.4e-06 57.0 84 42.9
Glyma.18G077600 Glycine max HOM05D001707 ORTHO05D001694 2.4e-06 57.0 131 51.1
Lj1C889G5 Lonicera japonica HOM05D001707 ORTHO05D001694 2.4e-06 57.0 33 72.7
Lalb_Chr10g0107401 Lupinus albus HOM05D001707 ORTHO05D001694 2.4e-06 57.0 84 45.2
Potri.011G093200 Populus trichocarpa HOM05D001707 ORTHO05D001694 2.4e-06 57.0 31 83.9
Prupe.4G242600 Prunus persica HOM05D001707 ORTHO05D001694 2.4e-06 57.0 31 87.1
PGR083G0672 Punica granatum HOM05D001707 ORTHO05D001694 2.4e-06 57.0 33 78.8
unitig_62.g23299 Utricularia gibba HOM05D001707 ORTHO05D007626 2.4e-06 57.0 33 72.7
CAN.G492.36 Capsicum annuum HOM05D001707 ORTHO05D001694 3.2e-06 56.6 33 72.7
Migut.H01758 Erythranthe guttata HOM05D001707 ORTHO05D001694 3.2e-06 56.6 33 81.8
Nn1g03185 Nelumbo nucifera HOM05D001707 ORTHO05D001694 3.2e-06 56.6 31 83.9
Oeu005486.1 Olea europaea HOM05D001707 ORTHO05D001694 3.2e-06 56.6 33 75.8
Oeu049399.1 Olea europaea HOM05D001707 ORTHO05D001694 3.2e-06 56.6 32 78.1
TAR629G2834 Trochodendron aralioides HOM05D001707 ORTHO05D001694 3.2e-06 56.6 76 44.7
Duzib170G0335 Durio zibethinus HOM05D001707 ORTHO05D001694 4.1e-06 56.2 33 78.8
Duzib268G1664 Durio zibethinus HOM05D001707 ORTHO05D001694 4.1e-06 56.2 33 78.8
Gohir.A04G006100 Gossypium hirsutum HOM05D001707 ORTHO05D001694 4.1e-06 56.2 33 78.8
Gohir.D05G383400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 4.1e-06 56.2 33 78.8
Gorai.009G450100 Gossypium raimondii HOM05D001707 ORTHO05D001694 4.1e-06 56.2 33 78.8
HanXRQChr13g0408161 Helianthus annuus HOM05D001707 ORTHO05D001694 4.1e-06 56.2 86 64.0
Nitab4.5_0003491g0070 Nicotiana tabacum HOM05D001707 ORTHO05D001694 4.1e-06 56.2 30 83.3
DCAR_013228 Daucus carota HOM05D001707 ORTHO05D001694 5.4e-06 55.8 33 78.8
ATR0827G138 Amborella trichopoda HOM05D001707 ORTHO05D001694 7.1e-06 55.5 31 83.9
Duzib213G0017 Durio zibethinus HOM05D001707 ORTHO05D001694 7.1e-06 55.5 33 78.8
TPR.G24131 Trifolium pratense HOM05D001707 ORTHO05D001694 7.1e-06 55.5 29 89.7
THA.LOC104817704 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 9.2e-06 55.1 36 72.2


User provided reference genes

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