Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 2.3e-226 788.5 383 100.0
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.1e-162 577.0 381 74.3
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.4e-154 550.1 374 71.7
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 5.5e-127 458.4 374 61.2
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 3.0e-125 452.6 389 58.6
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.4e-122 443.7 382 57.9
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 8.8e-117 424.5 387 55.3
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.1e-111 407.5 360 54.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.1e-110 403.3 362 56.6
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 2.3e-109 399.8 365 55.6
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 2.0e-108 396.7 380 53.4
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 4.4e-108 395.6 365 55.1
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.1e-106 391.0 381 53.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.1e-106 389.0 371 51.8
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 5.4e-106 388.7 371 52.3
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 5.9e-105 385.2 386 52.3
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.0e-104 384.4 382 51.3
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.1e-103 380.9 364 53.6
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.6e-102 377.1 368 51.4
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.7e-99 367.1 385 50.4
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.8e-99 366.3 348 51.4
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 6.3e-99 365.2 371 50.9
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.3e-99 364.8 362 49.2
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 3.1e-98 362.8 374 51.6
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.2e-97 360.9 370 47.6
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.0e-96 357.8 374 48.9
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 2.3e-96 356.7 365 49.3
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 8.6e-96 354.8 364 48.9
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.1e-95 354.4 366 50.0
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.5e-95 354.0 367 49.0
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.6e-95 352.1 370 47.0
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 7.3e-95 351.7 371 50.9
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.2e-94 350.9 371 50.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.1e-94 350.1 372 47.0
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.1e-94 348.6 364 48.6
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 8.0e-94 348.2 370 47.0
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.8e-93 347.1 364 48.6
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.8e-93 347.1 365 47.7
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.3e-93 346.7 373 50.7
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.0e-93 346.3 373 50.1
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.6e-92 343.2 378 47.9
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.4e-92 342.8 377 48.5
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-91 340.9 362 47.0
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.7e-91 340.5 362 47.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.7e-91 340.5 373 48.0
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.4e-91 338.6 362 47.0
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 8.3e-91 338.2 368 46.7
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 8.3e-91 338.2 378 47.9
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.8e-90 337.0 371 46.4
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 3.2e-90 336.3 362 47.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 3.2e-90 336.3 365 46.0
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 7.0e-90 335.1 365 50.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 9.2e-90 334.7 378 47.9
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.2e-89 334.3 368 47.0
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 2.7e-89 333.2 372 46.5
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.5e-89 332.8 364 47.0
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.3e-88 330.9 373 45.8
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.7e-88 330.5 365 47.1
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.0e-88 329.7 363 47.7
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.0e-88 328.9 370 46.2
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 8.6e-88 328.2 374 46.3
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 8.6e-88 328.2 368 45.7
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.9e-87 327.0 371 47.4
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.9e-87 327.0 400 43.5
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 6.2e-86 322.0 398 43.2
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.4e-85 320.9 353 45.6
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 5.2e-85 318.9 361 47.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.5e-84 317.4 374 44.4
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-84 316.6 374 45.2
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 3.4e-84 316.2 360 48.1
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 5.8e-84 315.5 357 44.0
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.7e-83 313.9 313 50.5
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.1e-82 311.2 358 46.1
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.4e-82 310.8 372 44.1
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 5.4e-82 308.9 372 43.3
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 9.2e-82 308.1 377 44.0
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.2e-82 308.1 378 43.4
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.3e-80 304.3 374 45.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-80 303.9 367 43.3
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-80 303.9 367 43.3
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.0e-80 302.4 244 59.0
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 6.6e-80 302.0 374 45.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.5e-79 300.1 358 44.4
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 3.3e-79 299.7 368 44.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 5.6e-79 298.9 362 43.9
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.1e-78 297.0 367 44.4
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.1e-78 297.0 372 45.4
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 2.8e-78 296.6 384 45.1
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 6.2e-78 295.4 357 43.7
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 8.1e-78 295.0 369 42.3
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.2e-77 292.4 388 44.6
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 2.2e-75 287.0 362 43.1
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.2e-75 287.0 368 41.3
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.1e-74 284.6 376 42.3
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-74 284.3 368 40.8
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 4.1e-74 282.7 377 42.2
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-73 280.8 372 39.2
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 7.8e-73 278.5 368 41.0
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.0e-72 278.1 382 41.4
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 1.0e-72 278.1 382 41.4
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 3.9e-72 276.2 382 41.1
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 3.9e-72 276.2 365 39.2
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.1e-71 274.6 382 41.4
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 9.5e-71 271.6 371 40.4
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.6e-70 270.8 369 41.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.8e-70 270.0 372 38.2
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 3.6e-70 269.6 377 39.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.4e-69 267.7 366 40.4
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.3e-69 266.9 369 40.7
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 4.0e-69 266.2 363 39.7
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 2.6e-68 263.5 367 42.0
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 4.4e-68 262.7 373 38.9
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 5.8e-68 262.3 391 39.4
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.9e-67 260.0 262 49.6
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 6.4e-67 258.8 375 42.1
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.4e-66 256.9 379 38.5
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 7.1e-66 255.4 377 40.1
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.6e-65 254.2 365 40.5
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.3e-64 250.4 361 41.6
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 3.0e-64 250.0 372 37.9
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.1e-62 243.8 293 42.7
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.6e-62 243.0 321 38.3
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.5e-60 237.7 266 46.2
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.5e-60 237.7 264 43.9
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.4e-60 236.1 231 50.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 7.1e-58 228.8 272 40.4
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 6.6e-56 222.2 280 42.1
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.5e-52 211.1 271 43.2
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.7e-49 200.3 369 33.6
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-43 181.0 214 40.7
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.2e-43 180.6 230 42.6
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.9e-39 167.5 179 46.9
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.9e-34 151.0 171 48.0
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.7e-32 142.1 179 41.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 6.3e-30 136.0 203 38.4
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.1e-29 133.7 393 28.5
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.7e-25 120.6 344 27.3
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.7e-25 120.6 356 27.2
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-24 118.2 203 38.4
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.1e-23 115.2 361 28.5
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.8e-22 109.8 352 25.0
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 6.9e-21 105.9 365 23.6
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 3.8e-19 100.1 356 23.6
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 1.1e-18 98.6 380 25.5
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 5.5e-18 96.3 340 24.4
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 7.2e-18 95.9 122 41.8
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 9.4e-18 95.5 359 23.7
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.6e-17 94.7 348 24.4
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 2.1e-17 94.4 346 25.1
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 2.7e-17 94.0 380 24.5
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 7.9e-17 92.4 114 40.4
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 1.4e-16 91.7 350 24.0
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.4e-16 91.7 339 24.2
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.4e-16 91.7 339 24.2
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 1.4e-16 91.7 345 23.8
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.8e-16 91.3 347 24.8
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.3e-16 90.9 333 27.3
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 3.9e-16 90.1 350 23.7
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 5.1e-16 89.7 74 54.1
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 8.8e-16 89.0 350 24.6
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 8.8e-16 89.0 105 46.7
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.1e-15 88.6 335 24.2
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 1.1e-15 88.6 351 23.9
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.5e-15 88.2 347 24.5
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 5.7e-15 86.3 344 23.5
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 7.4e-15 85.9 361 24.4
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.3e-14 85.1 88 47.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.7e-14 84.7 380 23.9
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.2e-14 84.3 90 41.1
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.2e-14 84.3 258 30.2
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 4.8e-14 83.2 335 24.8
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 6.3e-14 82.8 104 45.2
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 8.2e-14 82.4 353 23.5
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 1.1e-13 82.0 365 23.8
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 2.0e-12 77.8 89 43.8
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.7e-06 57.0 80 42.5


User provided reference genes

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