Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.2e-212 741.5 376 100.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.4e-191 672.2 373 91.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.5e-190 669.5 374 91.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.5e-177 626.3 369 86.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.5e-172 609.0 364 84.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.1e-171 605.9 368 84.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 5.2e-170 601.3 370 84.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.3e-168 596.7 371 82.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.3e-167 591.3 376 82.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.5e-164 581.3 366 81.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.8e-154 547.4 356 78.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.0e-153 546.2 352 79.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.4e-153 545.0 356 78.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.2e-152 542.7 356 78.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.7e-152 542.0 356 78.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 8.3e-152 540.8 357 77.3
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.4e-151 540.0 356 78.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.8e-151 539.7 360 77.2
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.4e-151 539.3 361 75.6
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.1e-151 538.9 357 76.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.4e-151 538.1 365 75.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.0e-150 536.2 356 76.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.0e-149 533.9 354 75.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.0e-149 533.9 361 74.8
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.0e-149 533.9 361 74.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.3e-149 532.7 361 74.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.9e-149 532.3 353 76.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.6e-149 530.8 354 75.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-148 530.4 352 75.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-148 529.3 358 74.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.3e-148 528.9 352 76.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.2e-148 528.5 356 76.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.5e-148 527.3 359 74.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-147 526.9 354 75.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.6e-147 525.4 352 75.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.0e-146 523.9 354 74.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-145 520.4 331 78.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.2e-145 520.4 360 73.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.0e-145 519.6 354 74.3
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 2.6e-145 519.2 353 74.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.4e-145 518.8 323 79.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 4.4e-145 518.5 373 72.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.7e-144 516.5 350 74.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.4e-143 511.5 356 73.0
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-142 510.4 357 72.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.6e-142 510.0 334 78.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.0e-142 509.6 356 72.5
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 4.6e-142 508.4 365 70.7
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.0e-141 507.3 382 69.9
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.9e-141 505.4 359 72.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.9e-141 505.4 356 71.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.1e-140 503.8 354 72.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-140 503.8 354 72.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.5e-140 503.4 381 69.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.9e-140 503.1 358 72.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 7.3e-140 501.1 358 70.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.5e-140 500.7 356 71.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-139 500.4 349 72.2
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.8e-139 499.2 308 81.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.6e-139 498.8 358 70.9
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.7e-139 498.4 331 74.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.4e-138 496.9 357 72.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.4e-138 496.9 351 71.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-138 496.5 356 71.3
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 3.1e-138 495.7 336 74.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.0e-138 495.4 351 71.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.0e-138 495.4 358 70.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.9e-138 494.2 357 70.9
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-137 493.8 349 71.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.0e-137 493.0 354 71.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 7.5e-137 491.1 411 64.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.4e-136 488.0 351 70.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.4e-136 488.0 362 69.3
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.3e-136 487.6 355 71.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 7.0e-135 484.6 348 70.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.0e-134 483.0 355 69.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.8e-134 481.1 327 73.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.9e-133 478.8 351 69.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.9e-133 478.8 351 70.1
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 5.0e-133 478.4 350 68.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 8.6e-133 477.6 330 70.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.3e-132 475.3 323 72.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 9.5e-132 474.2 351 67.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.2e-131 473.8 351 67.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-131 473.8 328 72.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.6e-131 473.4 333 71.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.8e-131 472.6 340 71.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.6e-131 472.2 359 66.3
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.6e-131 472.2 351 67.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.7e-131 471.9 328 71.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-130 470.3 323 72.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.4e-130 470.3 336 70.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.1e-130 469.2 332 72.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.2e-130 468.4 350 67.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.8e-130 468.0 396 63.9
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.9e-130 467.6 351 67.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.5e-129 466.8 350 67.4
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.0e-129 466.5 339 72.0
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.4e-129 465.7 341 68.3
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.4e-129 465.7 323 72.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.4e-129 465.3 351 66.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.4e-129 465.3 352 66.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 7.5e-129 464.5 321 71.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.7e-128 463.4 328 70.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.2e-127 459.1 325 71.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.1e-127 458.8 335 68.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 5.4e-127 458.4 334 71.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.4e-127 458.4 347 68.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 5.4e-127 458.4 351 66.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 7.1e-127 458.0 268 86.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.1e-126 456.4 325 70.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.5e-126 455.7 337 69.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.8e-126 454.5 339 67.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.3e-125 453.8 390 60.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.3e-125 453.0 333 67.6
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 5.1e-125 451.8 352 67.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.6e-125 451.4 338 69.5
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.9e-124 449.9 333 68.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-124 449.9 353 64.9
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.1e-123 446.4 268 82.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.2e-123 444.9 306 72.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.5e-121 440.3 353 62.9
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.6e-121 439.5 328 68.9
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.9e-120 435.3 308 71.4
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.4e-119 433.0 353 64.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-118 430.6 355 63.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.7e-117 426.8 356 63.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.4e-113 412.5 525 46.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-112 410.2 280 76.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 4.2e-111 405.6 290 74.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.7e-102 376.3 353 58.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.4e-97 359.4 353 54.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.2e-96 356.7 231 77.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.1e-94 350.1 339 53.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.9e-88 328.9 279 62.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.5e-87 326.6 297 55.9
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-86 323.9 202 80.2
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.5e-86 322.8 249 65.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.9e-84 317.0 232 70.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 4.5e-81 305.8 267 61.0
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 4.5e-81 305.8 236 67.8
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 7.6e-81 305.1 202 76.2
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-75 285.8 163 88.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.5e-71 272.3 191 74.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 8.2e-67 258.5 200 70.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.2e-63 246.1 371 40.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.7e-59 233.0 189 61.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.4e-58 230.3 161 70.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.4e-58 230.3 162 71.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.0e-58 228.8 164 71.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.5e-57 226.1 211 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.6e-49 201.1 276 43.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 5.0e-48 196.1 149 67.8
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 6.1e-46 189.1 325 39.1
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.0e-36 157.5 115 71.3
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 6.8e-29 132.5 274 33.2
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.7e-27 127.9 377 31.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.7e-27 126.7 322 32.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.0e-26 122.5 111 55.0
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.0e-25 120.9 71 84.5
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-20 105.1 66 74.2
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-19 101.7 215 34.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-17 94.7 57 77.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.0e-17 94.4 63 68.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.0e-17 92.8 56 85.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 4.3e-15 86.7 87 51.7
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 7.8e-09 65.9 82 45.1
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-08 65.1 63 58.7
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 9.5e-07 58.9 67 53.7


User provided reference genes

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