Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.2e-81 305.1 157 100.0
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.8e-79 299.3 157 98.1
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 6.7e-79 297.4 156 96.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.5e-78 295.4 156 96.2
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.4e-78 293.9 156 95.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.6e-77 292.7 156 94.2
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.1e-76 290.0 156 94.9
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.1e-76 290.0 156 94.9
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 4.5e-75 284.6 156 92.9
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.6e-75 283.9 155 94.8
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.9e-74 281.2 157 92.4
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.9e-73 279.3 156 90.4
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.5e-70 268.9 153 88.9
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 5.6e-70 267.7 156 87.2
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.3e-69 266.5 153 88.2
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.8e-69 265.4 156 86.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 4.0e-68 261.5 156 85.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 4.5e-67 258.1 156 84.6
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.5e-67 258.1 142 92.3
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.7e-66 256.1 156 84.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.2e-66 255.8 156 85.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.8e-66 255.0 156 85.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 3.8e-66 255.0 156 82.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.4e-66 253.8 156 81.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.1e-65 253.4 147 87.8
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.1e-65 253.4 156 81.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.4e-65 253.1 156 83.3
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.9e-65 252.7 156 82.7
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 2.5e-65 252.3 156 84.6
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.1e-64 249.2 156 80.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.5e-64 248.4 156 81.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.0e-64 247.7 155 82.6
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 7.9e-64 247.3 155 82.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.3e-63 246.5 155 81.9
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.3e-63 245.7 155 82.6
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.1e-62 243.4 155 78.7
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 5.7e-62 241.1 158 82.9
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 6.3e-61 237.7 157 78.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.4e-60 236.5 152 83.6
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.8e-60 236.1 157 79.6
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 5.3e-60 234.6 156 77.6
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 5.3e-60 234.6 155 76.8
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.4e-59 231.9 171 74.3
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.9e-58 228.8 156 76.3
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-58 228.8 157 76.4
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-58 228.4 157 76.4
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.8e-58 228.4 157 76.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 5.0e-58 228.0 155 78.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.4e-57 226.5 199 64.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.7e-56 222.2 156 75.6
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.7e-56 222.2 156 73.7
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.6e-56 221.5 154 75.3
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.3e-55 219.2 158 71.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.3e-55 219.2 155 74.2
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.9e-55 218.4 155 74.2
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 3.9e-55 218.4 155 74.2
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.9e-55 218.4 155 74.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 6.7e-55 217.6 156 74.4
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 6.7e-55 217.6 221 56.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 6.7e-55 217.6 155 74.2
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.7e-55 217.2 155 73.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.1e-54 216.9 183 66.7
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-54 216.9 155 73.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-54 216.1 156 74.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 3.3e-54 215.3 155 71.6
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 8.2e-53 210.7 155 69.7
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.4e-52 209.9 129 82.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.8e-52 209.5 156 73.7
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.8e-52 209.5 156 72.4
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.1e-52 208.4 156 71.2
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.1e-52 208.4 156 71.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 6.9e-52 207.6 158 73.4
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.2e-51 206.8 155 69.0
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.2e-51 206.8 155 72.9
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.5e-51 206.5 155 68.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.6e-51 205.7 158 72.8
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.4e-51 205.3 156 70.5
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-50 203.8 154 70.8
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.0e-50 203.8 152 73.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.3e-50 203.4 155 67.7
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.2e-50 202.6 160 66.9
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.2e-50 202.6 152 70.4
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 72.3
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 3.8e-50 201.8 155 71.6
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.8e-50 201.8 155 72.9
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 5.0e-50 201.4 155 68.4
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 8.5e-50 200.7 155 71.6
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.9e-49 199.5 152 67.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.6e-48 196.4 155 70.3
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.1e-48 196.1 152 71.7
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.9e-48 194.1 151 70.2
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 157 65.6
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.0e-47 193.7 157 66.2
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-47 193.4 154 66.9
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.0e-47 192.2 156 64.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.0e-47 192.2 155 65.8
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.9e-47 191.8 156 66.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 6.7e-47 191.0 156 66.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 6.7e-47 191.0 268 47.0
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.8e-47 190.7 156 64.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.8e-47 190.7 156 65.4
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-46 190.3 154 66.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.6e-46 189.1 154 65.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.4e-46 188.3 154 65.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 5.7e-46 188.0 155 69.7
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-45 186.4 157 66.9
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.3e-45 184.5 184 59.2
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.8e-44 183.0 156 66.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.1e-44 182.2 156 60.3
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 5.3e-44 181.4 123 77.2
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.9e-44 181.0 159 63.5
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 9.1e-44 180.6 157 61.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-43 179.5 165 63.6
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.4e-43 178.7 143 67.8
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.4e-43 178.7 143 67.8
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 5.9e-43 177.9 140 67.1
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 5.9e-43 177.9 155 60.0
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.2e-40 170.2 150 61.3
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.1e-40 169.5 133 69.9
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.7e-40 168.3 164 59.8
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.8e-39 166.4 159 60.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.0e-39 165.6 154 57.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-39 165.6 97 84.5
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.0e-39 165.6 123 72.4
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.9e-39 165.2 177 55.9
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.2e-39 164.9 154 57.1
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 5.2e-39 164.9 157 59.9
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 6.7e-39 164.5 154 59.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.1e-38 163.7 154 59.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.1e-38 163.7 154 59.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.1e-38 163.7 114 71.9
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.1e-38 163.7 154 59.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.0e-38 162.9 155 59.4
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.6e-38 162.5 156 60.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.4e-38 161.0 93 83.9
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.3e-37 160.2 141 61.7
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.8e-37 158.3 153 58.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.8e-37 158.3 156 55.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.4e-36 156.8 93 81.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.1e-36 155.6 116 68.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-36 155.6 95 84.2
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.1e-36 155.6 149 55.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 5.9e-35 151.4 121 67.8
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.7e-35 151.0 98 77.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.9e-34 149.1 144 60.4
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.5e-34 147.9 153 56.9
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.5e-33 146.7 119 66.4
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.5e-33 146.7 158 55.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 9.4e-33 144.1 178 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.7e-32 142.5 143 56.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 8.0e-32 141.0 96 72.9
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-31 140.6 156 55.8
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.3e-31 139.4 102 68.6
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.0e-31 139.0 124 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.0e-31 138.7 143 58.0
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.3e-29 131.3 155 49.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.8e-28 129.8 93 71.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-27 126.3 94 68.1
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 4.5e-27 125.2 167 46.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.7e-26 123.2 148 53.4
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.5e-25 120.2 92 65.2
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 4.4e-22 108.6 86 69.8
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.2e-21 106.3 85 70.6
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.7e-19 99.4 75 64.0
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.5e-19 98.6 91 63.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.5e-18 94.7 83 54.2
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.5e-17 90.9 91 57.1
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.8e-15 86.7 61 68.9
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 9.8e-14 80.9 88 52.3
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.1e-12 75.5 45 75.6
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-11 72.8 58 58.6
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.9e-11 71.6 66 51.5
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 5.9e-11 71.6 62 64.5
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-10 70.9 58 58.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.3e-09 64.7 93 48.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.2e-08 63.9 86 41.9
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.8e-08 62.8 41 73.2
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 1.4e-07 60.5 36 86.1
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.0e-07 58.9 76 42.1
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 5.2e-07 58.5 141 34.8


User provided reference genes

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