Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.2e-76 288.9 143 100.0
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.5e-64 248.8 131 94.7
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 2.0e-58 229.2 142 84.5
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 2.0e-58 229.2 142 83.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.9e-58 227.6 142 83.1
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.5e-53 213.0 137 81.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.4e-51 205.7 142 75.4
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 5.3e-51 204.5 141 76.6
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.5e-50 201.8 141 76.6
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.7e-49 199.5 142 71.8
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.2e-49 199.1 141 73.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.9e-49 198.7 142 72.5
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.8e-49 198.4 142 71.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.5e-40 169.9 143 62.9
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 3.3e-40 168.7 145 61.4
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 5.5e-40 167.9 145 62.1
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 7.2e-40 167.5 145 60.7
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 9.5e-40 167.2 145 59.3
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.2e-39 166.8 145 60.7
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.6e-39 166.4 145 60.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 8.0e-39 164.1 145 60.0
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.0e-38 163.7 146 56.8
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.8e-38 162.9 145 60.7
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 4.0e-38 161.8 145 61.4
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 5.2e-38 161.4 146 56.8
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 5.2e-38 161.4 143 58.0
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 5.2e-38 161.4 145 59.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 6.8e-38 161.0 145 62.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 6.8e-38 161.0 146 62.3
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.2e-37 160.2 146 56.2
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.2e-37 160.2 146 58.9
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.2e-37 160.2 146 58.9
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.2e-37 160.2 145 60.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.2e-37 160.2 146 60.3
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.5e-37 159.8 146 56.2
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.5e-37 159.8 146 56.2
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.5e-37 159.8 146 56.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.5e-37 159.8 146 55.5
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.0e-37 159.5 146 56.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.6e-37 159.1 145 57.2
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.4e-37 158.7 146 58.9
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 3.4e-37 158.7 146 58.9
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.4e-37 158.3 145 58.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.5e-37 157.5 146 59.6
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 7.5e-37 157.5 146 59.6
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.5e-37 157.5 142 58.5
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 7.5e-37 157.5 146 59.6
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 9.8e-37 157.1 144 55.6
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 9.8e-37 157.1 149 59.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.3e-36 156.8 144 54.9
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.3e-36 156.8 145 60.0
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.7e-36 156.4 146 58.9
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.7e-36 156.4 142 57.7
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.2e-36 156.0 146 54.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 2.2e-36 156.0 146 55.5
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.2e-36 156.0 146 57.5
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.8e-36 155.6 145 55.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 2.8e-36 155.6 146 57.5
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.8e-36 155.6 145 57.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.7e-36 155.2 146 54.8
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 4.9e-36 154.8 146 54.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.9e-36 154.8 146 58.9
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 6.3e-36 154.5 145 56.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 6.3e-36 154.5 145 57.2
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 6.3e-36 154.5 146 52.1
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 8.3e-36 154.1 146 54.8
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 8.3e-36 154.1 146 59.6
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.4e-35 153.3 134 60.4
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.4e-35 153.3 146 55.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.1e-35 152.1 141 56.0
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.0e-35 151.0 146 57.5
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 7.0e-35 151.0 145 53.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 7.0e-35 151.0 146 54.1
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.0e-34 149.4 145 52.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.7e-34 149.1 146 54.8
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 3.5e-34 148.7 145 51.7
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.5e-34 148.7 145 51.7
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 3.5e-34 148.7 145 53.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.5e-34 148.7 145 55.9
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.5e-34 148.3 145 55.2
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.9e-34 147.9 145 51.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.9e-33 145.6 142 57.0
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 6.6e-33 144.4 141 53.2
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 8.6e-33 144.1 146 52.7
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 4.3e-32 141.7 146 53.4
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.3e-32 141.0 146 52.7
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.2e-31 140.2 141 51.8
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.8e-31 139.0 140 54.3
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 6.8e-30 134.4 146 49.3
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.2e-29 133.7 142 52.8
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-29 133.7 143 51.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-29 133.7 143 51.0
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.0e-29 132.9 143 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.7e-28 129.8 143 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.9e-28 128.3 143 46.2
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 4.9e-28 128.3 143 51.0
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.4e-28 127.9 141 49.6
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.5e-24 116.7 117 53.8
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.9e-24 116.3 142 45.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 6.8e-22 107.8 146 45.2
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.7e-20 103.2 142 40.8
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 6.4e-20 101.3 140 41.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.9e-19 99.8 99 54.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.8e-18 94.4 165 40.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.0e-17 92.4 90 57.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 5.0e-17 91.7 68 67.6
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 8.1e-15 84.3 126 44.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.1e-14 84.0 129 39.5
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.1e-14 84.0 142 39.4
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.2e-12 76.3 42 88.1


User provided reference genes

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