Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 5.1e-31 137.1 69 100.0
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.5e-27 125.6 65 96.9
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 2.2e-26 121.7 69 87.0
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 5.4e-25 117.1 69 81.2
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 1.0e-23 112.8 69 76.8
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.7e-23 112.1 69 73.9
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 3.0e-23 111.3 69 75.4
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 3.0e-23 111.3 69 73.9
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.1e-23 110.5 69 78.3
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.1e-23 110.5 69 72.5
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 8.6e-23 109.8 69 71.0
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 8.6e-23 109.8 69 73.9
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.1e-22 109.4 69 73.9
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-22 109.0 69 76.8
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.5e-22 108.2 69 69.6
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.5e-22 108.2 69 72.5
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 2.5e-22 108.2 69 72.5
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 3.3e-22 107.8 69 71.0
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.3e-22 107.8 69 71.0
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.3e-22 107.5 69 71.0
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 4.3e-22 107.5 69 73.9
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 5.6e-22 107.1 69 72.5
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 5.6e-22 107.1 68 70.6
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 7.3e-22 106.7 69 71.0
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-22 106.7 69 71.0
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-22 106.7 69 71.0
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-22 106.7 69 71.0
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-22 106.7 69 71.0
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 9.6e-22 106.3 69 72.5
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 9.6e-22 106.3 69 76.8
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.2e-21 105.9 69 69.6
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.2e-21 105.9 69 71.0
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.6e-21 105.5 69 69.6
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.6e-21 105.5 69 69.6
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 3.6e-21 104.4 69 66.7
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 4.7e-21 104.0 69 72.5
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 6.2e-21 103.6 69 71.0
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 6.2e-21 103.6 69 68.1
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 6.2e-21 103.6 69 66.7
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 6.2e-21 103.6 69 71.0
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 8.1e-21 103.2 69 69.6
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.8e-20 102.1 69 68.1
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 2.4e-20 101.7 69 72.5
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 100.9 69 71.0
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 100.9 69 71.0
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 5.2e-20 100.5 70 70.0
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 5.2e-20 100.5 70 70.0
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.2e-20 100.5 69 71.0
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 6.9e-20 100.1 70 70.0
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 6.9e-20 100.1 70 70.0
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 8.9e-20 99.8 69 68.1
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 1.5e-19 99.0 70 70.0
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.5e-19 99.0 70 70.0
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-19 98.6 70 70.0
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 2.0e-19 98.6 69 65.2
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 2.6e-19 98.2 69 66.7
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 3.4e-19 97.8 69 69.6
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 5.8e-19 97.1 69 63.8
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 7.6e-19 96.7 69 63.8
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 7.6e-19 96.7 65 67.7
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 9.9e-19 96.3 65 66.2
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.3e-18 95.9 69 66.7
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.7e-18 95.5 69 68.1
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.7e-18 95.5 69 63.8
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.2e-18 95.1 69 63.8
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 4.9e-18 94.0 69 66.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 6.4e-18 93.6 69 65.2
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-17 92.4 70 67.1
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.9e-17 92.0 69 62.3
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.9e-17 92.0 69 66.7
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.9e-17 92.0 69 60.9
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.2e-17 90.9 69 63.8
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.2e-17 90.9 69 63.8
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 5.4e-17 90.5 68 63.2
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 5.4e-17 90.5 69 60.9
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 7.1e-17 90.1 69 60.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 9.3e-17 89.7 61 67.2
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-16 89.4 69 65.2
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-16 89.4 69 59.4
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 1.6e-16 89.0 69 59.4
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.6e-16 89.0 69 62.3
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 2.1e-16 88.6 69 62.3
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 2.7e-16 88.2 69 60.9
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 6.0e-16 87.0 53 79.2
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 7.8e-16 86.7 69 58.0
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.3e-15 85.9 69 60.9
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.3e-15 85.1 64 60.9
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 3.9e-15 84.3 69 58.0
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 3.9e-15 84.3 69 56.5
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 6.6e-15 83.6 69 56.5
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.1e-14 82.8 69 58.0
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 1.9e-14 82.0 69 55.1
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 1.3e-13 79.3 69 56.5
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 2.1e-13 78.6 51 78.4
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 4.0e-12 74.3 52 69.2
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 2.6e-11 71.6 70 52.9
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 9.9e-11 69.7 64 53.1
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 4.9e-10 67.4 53 62.3
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.4e-09 65.9 61 50.8
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.9e-09 65.5 44 70.5
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.4e-09 65.1 45 71.1
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 4.2e-09 64.3 45 71.1
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 4.2e-09 64.3 45 71.1
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 5.4e-09 63.9 69 44.9
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.8e-07 58.9 52 55.8
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 6.7e-07 57.0 40 65.0
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 8.7e-07 56.6 62 48.4


User provided reference genes

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