Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 0.0e+00 1146.7 1053 100.0
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 2.3e-103 381.3 221 86.0
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 4.9e-93 347.1 219 77.2
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 1.0e-90 339.3 222 75.7
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 4.5e-86 323.9 203 80.8
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 2.1e-83 315.1 225 72.0
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 6.7e-82 310.1 221 68.8
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 8.1e-80 303.1 224 67.4
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 8.1e-80 303.1 236 64.0
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 1.3e-74 285.8 222 64.4
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 1.1e-71 276.2 205 65.9
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 2.4e-63 248.4 226 53.5
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 3.1e-63 248.1 219 55.3
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 5.9e-62 243.8 197 59.4
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.7e-61 242.3 217 53.9
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.7e-61 242.3 199 57.8
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 3.8e-61 241.1 226 54.0
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 5.0e-61 240.7 227 53.3
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 6.5e-61 240.4 216 54.6
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.1e-60 239.6 199 56.8
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 1.4e-60 239.2 216 53.2
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 2.5e-60 238.4 218 52.8
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 5.5e-60 237.3 216 54.6
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 7.2e-60 236.9 219 54.3
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 1.2e-59 236.1 218 52.8
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 7.9e-59 233.4 216 53.2
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 7.9e-59 233.4 218 53.7
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.0e-58 233.0 217 52.5
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 1.0e-58 233.0 199 54.8
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 1.8e-58 232.3 216 52.8
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 3.0e-58 231.5 218 51.8
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 3.9e-58 231.1 218 51.8
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 5.1e-58 230.7 216 53.7
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 8.7e-58 229.9 222 55.4
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 8.7e-58 229.9 218 51.4
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 8.7e-58 229.9 225 51.1
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 1.9e-57 228.8 212 51.4
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 5.7e-57 227.3 217 52.1
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 5.7e-57 227.3 218 51.4
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 1.3e-56 226.1 217 52.1
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 1.3e-56 226.1 219 51.6
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 1.3e-56 226.1 247 47.0
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 1.6e-56 225.7 202 55.0
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 3.7e-56 224.6 213 50.7
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 6.3e-56 223.8 216 50.9
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 6.3e-56 223.8 216 52.3
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 2.4e-55 221.9 222 48.2
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 2.4e-55 221.9 216 50.0
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 4.1e-55 221.1 199 54.3
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 1.5e-54 219.2 215 49.8
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 1.5e-54 219.2 245 48.2
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 2.6e-54 218.4 224 48.7
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 1.0e-53 216.5 214 46.7
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 2.2e-53 215.3 194 54.1
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 2.2e-53 215.3 214 47.2
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 5.0e-53 214.2 192 53.1
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 8.5e-53 213.4 216 50.0
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 1.4e-52 212.6 194 53.1
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.4e-52 212.6 260 45.0
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 4.2e-52 211.1 221 47.5
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 4.2e-52 211.1 193 52.8
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 9.4e-52 209.9 190 53.2
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 1.2e-51 209.5 190 53.2
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.2e-51 209.5 246 43.9
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 1.2e-51 209.5 188 53.2
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 3.6e-51 208.0 195 51.3
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 3.6e-51 208.0 213 47.4
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 3.6e-51 208.0 228 48.2
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 6.1e-51 207.2 219 50.7
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 7.9e-51 206.8 195 50.8
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 7.9e-51 206.8 195 51.3
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 1.4e-50 206.1 195 50.8
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 1.8e-50 205.7 195 50.8
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 5.1e-50 204.1 208 49.0
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 1.1e-49 203.0 184 52.7
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 4.4e-49 201.1 220 46.4
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 7.4e-49 200.3 196 51.5
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 9.7e-49 199.9 254 42.5
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 3.7e-48 198.0 211 45.5
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 7.7e-46 190.3 167 55.1
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 1.7e-45 189.1 182 49.5
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 2.2e-45 188.7 188 49.5
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 4.2e-44 184.5 218 45.9
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 1.6e-43 182.6 219 45.7
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 2.7e-43 181.8 182 47.8
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 6.1e-43 180.6 165 52.7
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 6.7e-42 177.2 160 55.0
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 9.4e-36 156.8 230 39.6
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 8.0e-35 153.7 223 39.0
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 8.2e-32 143.7 193 39.4
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 1.7e-29 136.0 162 42.0
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 2.0e-25 122.5 160 42.5
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 2.4e-23 115.5 134 45.5
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 5.4e-23 114.4 76 67.1
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.0e-21 110.2 65 78.5
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.0e-21 110.2 65 78.5
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 1.0e-18 100.1 102 38.2
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 1.4e-18 99.8 64 67.2
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 1.8e-18 99.4 59 74.6
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 3.0e-18 98.6 160 34.4
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 3.4e-17 95.1 101 35.6
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 4.4e-17 94.7 67 67.2
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 4.1e-15 88.2 168 31.0
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 9.2e-15 87.0 164 29.3
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.0e-14 85.9 54 70.4
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 1.0e-13 83.6 54 70.4
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 3.8e-13 81.6 92 47.8
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 5.0e-13 81.3 86 39.5
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 2.0e-09 69.3 38 86.8
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 1.7e-08 66.2 103 39.8
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 8.3e-08 63.9 39 69.2
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 2.4e-07 62.4 43 62.8
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 2.4e-07 62.4 81 39.5
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 1.6e-06 59.7 36 66.7
TPR.G15046 Trifolium pratense HOM05D006866 ORTHO05D412417 1.6e-06 59.7 177 30.5
Medtr1g090667 Medicago truncatula HOM05D000686 ORTHO05D000512 5.9e-06 57.8 32 65.6
TPR.G2438 Trifolium pratense HOM05D000686 ORTHO05D000512 7.8e-06 57.4 32 68.8


User provided reference genes

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