Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 1.7e-158 562.8 319 100.0
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 5.1e-102 375.2 305 74.1
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 4.9e-97 358.6 299 69.6
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.6e-92 343.6 315 65.1
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 5.0e-81 305.4 292 63.0
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 1.2e-79 300.8 297 62.6
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 1.0e-78 297.7 298 62.4
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 5.1e-78 295.4 313 59.4
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.5e-77 293.9 254 66.5
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.4e-70 270.8 302 61.9
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 7.5e-61 238.4 240 57.5
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.3e-57 227.6 316 49.7
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 2.9e-57 226.5 212 59.0
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 2.9e-57 226.5 252 50.8
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 3.8e-57 226.1 208 63.0
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 5.0e-57 225.7 212 57.1
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 8.5e-57 224.9 216 59.3
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 1.5e-56 224.2 252 50.4
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.5e-56 224.2 252 52.8
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.9e-56 223.8 272 54.0
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 1.9e-56 223.8 206 60.7
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 2.5e-56 223.4 271 51.7
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 2.5e-56 223.4 211 58.3
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 5.5e-56 222.2 213 59.2
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 2.1e-55 220.3 297 48.5
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 8.0e-55 218.4 210 56.2
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 1.2e-53 214.5 213 58.2
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 2.0e-53 213.8 214 56.5
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 2.6e-53 213.4 292 46.9
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 7.5e-53 211.8 209 57.9
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.7e-52 210.7 210 54.8
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 1.7e-52 210.7 257 52.1
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 2.2e-52 210.3 306 46.7
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 3.7e-52 209.5 207 57.0
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 3.7e-52 209.5 213 56.8
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 3.7e-52 209.5 211 56.4
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 4.8e-52 209.1 215 55.8
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 4.8e-52 209.1 247 51.0
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 6.3e-52 208.8 268 50.4
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 6.3e-52 208.8 212 58.0
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 8.3e-52 208.4 244 52.5
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.1e-51 208.0 305 44.6
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.4e-51 207.6 256 48.8
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.8e-51 207.2 248 52.0
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 1.8e-51 207.2 244 52.0
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 7.0e-51 205.3 207 55.1
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 9.1e-51 204.9 218 55.5
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 1.6e-50 204.1 262 48.9
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 2.7e-50 203.4 212 57.1
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 4.5e-50 202.6 219 51.6
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 4.5e-50 202.6 206 55.8
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 5.9e-50 202.2 198 57.6
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 5.9e-50 202.2 283 45.9
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 7.7e-50 201.8 259 47.1
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 1.0e-49 201.4 238 50.0
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 1.0e-49 201.4 210 53.8
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.7e-49 200.7 269 47.6
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.7e-49 200.7 352 43.2
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 2.9e-49 199.9 205 55.6
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 3.8e-49 199.5 259 46.7
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 5.0e-49 199.1 286 45.8
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 8.5e-49 198.4 303 42.9
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 8.5e-49 198.4 206 55.3
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 1.5e-48 197.6 270 48.9
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 1.9e-48 197.2 219 50.2
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 9.4e-48 194.9 207 52.2
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 9.4e-48 194.9 240 49.6
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 1.6e-47 194.1 222 53.2
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 2.1e-47 193.7 213 54.5
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 3.6e-47 193.0 215 52.6
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 1.0e-46 191.4 219 52.1
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.0e-46 191.4 208 56.2
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.4e-46 191.0 268 45.5
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 1.4e-46 191.0 208 51.4
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 5.2e-46 189.1 262 47.3
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 5.2e-46 189.1 220 51.4
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 5.2e-46 189.1 264 48.9
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 8.8e-46 188.3 349 40.7
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 1.2e-45 188.0 246 45.9
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.2e-45 188.0 207 51.2
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 2.0e-45 187.2 210 51.9
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 7.5e-45 185.3 210 51.0
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.3e-44 184.5 207 50.7
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.3e-44 184.5 211 52.1
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 1.3e-44 184.5 161 60.2
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 2.8e-44 183.3 274 45.6
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.8e-44 183.3 213 53.1
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 4.9e-44 182.6 275 46.2
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 8.3e-44 181.8 205 53.7
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.4e-43 181.0 192 55.7
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 2.0e-42 177.2 195 55.4
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 3.5e-42 176.4 193 52.3
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 3.8e-41 172.9 239 46.4
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 5.0e-41 172.6 239 45.6
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 5.0e-41 172.6 209 50.7
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.3e-38 163.7 208 49.5
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 9.2e-35 151.8 176 55.7
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 2.5e-32 143.7 216 44.0
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 1.8e-30 137.5 202 46.0
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 3.7e-28 129.8 183 42.1
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 3.3e-24 116.7 95 72.6
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.2e-21 108.2 211 41.7
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 1.5e-21 107.8 260 31.5
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 3.7e-20 103.2 210 37.6
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.5e-16 90.5 124 49.2
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 2.5e-16 90.5 62 67.7
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.8e-14 84.3 150 42.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 5.2e-14 82.8 136 36.8
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 6.8e-14 82.4 97 49.5
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 6.4e-12 75.9 85 51.8
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 2.4e-11 73.9 121 38.0
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 9.2e-11 72.0 78 41.0
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.7e-09 67.8 154 38.3
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.6e-09 65.5 52 63.5
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-08 65.1 121 43.8
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.5e-08 64.7 42 71.4
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 8.1e-07 58.9 103 38.8


User provided reference genes

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