Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 0.0e+00 1539.2 806 100.0
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 0.0e+00 1393.3 811 88.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 0.0e+00 1352.4 812 86.0
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 0.0e+00 1305.0 787 86.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 0.0e+00 1265.0 810 80.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1217.2 810 78.3
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1206.0 810 76.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 0.0e+00 1196.8 815 76.2
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 0.0e+00 1179.9 810 75.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 0.0e+00 1159.4 810 74.6
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1139.0 814 73.3
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1132.1 815 73.1
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 7.1e-294 1013.8 827 64.9
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 4.6e-293 1011.1 781 67.1
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.0e-292 1008.4 832 64.5
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 5.7e-291 1004.2 827 64.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 5.3e-289 997.7 824 65.8
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 2.6e-288 995.3 827 64.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.1e-286 989.9 824 63.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-286 989.9 829 64.7
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 5.5e-286 987.6 827 63.7
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 1.2e-285 986.5 828 65.8
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.3e-283 978.4 824 64.2
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.2e-282 973.8 823 63.9
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 3.4e-280 968.4 794 63.5
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.0e-279 966.8 823 63.8
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 2.2e-279 965.7 827 63.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.9e-279 965.3 823 63.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.4e-278 963.0 827 62.9
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.4e-278 963.0 826 63.7
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.2e-277 959.9 823 63.2
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 4.7e-277 958.0 828 62.9
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 7.9e-277 957.2 794 63.1
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.1e-275 953.4 796 63.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.4e-275 951.4 794 63.0
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 7.4e-275 950.7 761 65.8
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-274 949.9 799 63.1
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.7e-274 948.3 808 61.9
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.8e-273 946.0 761 65.7
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.0e-273 944.1 872 60.0
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.2e-271 939.1 796 62.3
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 7.2e-270 934.1 793 61.8
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.4e-268 929.9 825 60.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.5e-267 926.4 790 61.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.2e-266 922.5 790 60.9
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.2e-266 922.5 828 61.5
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.8e-266 921.4 793 60.9
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.1e-265 918.7 828 61.0
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 7.0e-265 917.5 789 63.4
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.6e-264 916.4 793 61.0
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.6e-264 916.4 788 60.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.6e-264 916.4 790 60.8
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 5.0e-263 911.4 791 61.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.9e-262 909.4 795 60.5
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 7.2e-262 907.5 804 60.2
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 5.2e-260 901.4 792 60.0
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.6e-259 899.0 792 59.5
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.0e-257 891.0 828 58.9
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.2e-256 890.2 792 60.0
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 5.9e-256 887.9 792 59.7
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.7e-255 886.3 741 64.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 3.8e-255 885.2 830 59.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 8.5e-255 884.0 792 59.2
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.6e-253 879.8 828 59.1
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.4e-252 876.7 798 58.4
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.8e-252 876.3 795 59.0
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.8e-252 874.4 807 57.2
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.4e-251 872.1 797 59.1
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 7.5e-251 870.9 799 58.2
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 2.8e-250 869.0 798 57.6
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 5.0e-247 858.2 793 57.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 2.1e-245 852.8 792 57.8
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.2e-243 847.0 791 57.4
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 4.9e-242 841.6 828 56.0
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 7.0e-241 837.8 799 56.9
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.6e-240 836.6 825 56.1
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.0e-240 836.3 828 56.2
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.7e-239 833.2 794 57.3
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.9e-239 832.0 805 55.7
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.0e-239 831.6 833 55.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.6e-239 831.2 827 54.9
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.3e-238 827.8 829 55.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.1e-237 826.2 828 55.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 8.0e-237 824.3 800 55.6
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 8.9e-236 820.8 827 55.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.2e-234 816.2 835 55.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 3.2e-233 812.4 831 55.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 3.2e-233 812.4 831 55.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 3.2e-233 812.4 831 55.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 3.2e-233 812.4 835 54.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 2.3e-231 806.2 778 56.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.6e-230 801.6 804 54.4
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.7e-226 790.0 832 54.1
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.0e-223 779.2 793 53.8
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 4.3e-214 748.8 621 64.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 5.6e-206 721.8 788 53.0
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 5.8e-187 658.7 496 71.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.0e-186 657.9 650 54.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.2e-186 656.8 650 54.9
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.9e-186 656.4 644 56.1
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.1e-177 627.9 458 69.9
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.3e-174 616.3 465 69.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 6.3e-173 612.1 499 65.7
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.1e-172 611.3 499 64.9
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 9.4e-169 598.2 502 64.5
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 7.4e-166 588.6 488 65.0
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.6e-163 580.1 461 66.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.6e-163 580.1 461 66.6
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 2.2e-162 577.0 850 42.9
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.5e-155 552.7 566 52.5
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.5e-155 552.7 497 60.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 9.4e-153 545.0 451 62.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.0e-151 540.0 456 63.2
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.1e-150 538.1 455 62.4
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.3e-148 529.3 735 43.9
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.0e-143 515.0 453 59.8
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.0e-143 515.0 446 61.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.6e-142 510.4 452 60.8
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.4e-142 509.6 455 60.0
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 5.9e-139 499.2 454 58.8
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.2e-137 493.0 459 57.7
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-136 491.5 449 60.6
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.6e-136 490.0 525 50.7
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.5e-134 484.6 412 61.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 6.3e-133 479.2 444 57.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.2e-131 474.9 446 57.0
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.0e-130 471.9 694 41.6
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.3e-129 465.7 458 56.3
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 8.9e-127 458.8 446 55.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-126 458.4 446 56.1
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-126 458.0 446 56.1
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.0e-126 457.6 744 39.2
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.1e-124 451.8 743 40.0
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 5.0e-122 443.0 677 40.8
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.6e-114 416.0 295 71.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-113 414.8 455 52.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 3.6e-112 410.2 455 51.0
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.4e-95 355.1 315 59.7
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 8.7e-90 335.9 339 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.8e-88 330.9 456 43.4
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.0e-86 324.7 261 66.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.8e-85 320.5 231 74.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 9.0e-79 299.3 196 77.6
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 6.9e-63 246.5 359 40.1
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 6.9e-55 219.9 746 28.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.3e-53 215.7 147 72.1
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.3e-53 215.7 147 72.1
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.9e-52 211.8 147 68.7
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 8.8e-50 203.0 405 36.5
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-46 192.2 136 69.9
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.1e-44 186.0 436 31.0
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 5.5e-44 183.7 133 64.7
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.7e-27 128.3 90 64.4
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.0e-19 100.1 95 61.1
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.7e-17 94.0 154 42.2
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.8e-17 93.2 154 41.6
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.3e-16 90.1 94 53.2
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.0e-13 83.2 70 54.3
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.4e-10 72.8 54 59.3


User provided reference genes

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