Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24008 Trifolium pratense HOM05D006620 ORTHO05D008921 7.2e-267 923.3 455 100.0
Medtr1g046250 Medicago truncatula HOM05D006620 ORTHO05D008921 9.7e-248 859.8 451 92.9
Glyma.10G128400 Glycine max HOM05D006620 ORTHO05D008921 1.5e-240 835.9 454 89.4
Lj6g0024353 Lotus japonicus HOM05D006620 ORTHO05D008921 3.1e-238 828.2 453 88.1
VMungo0720G1672 Vigna mungo HOM05D006620 ORTHO05D008921 1.2e-237 826.2 453 89.2
Phvul.007G238800 Phaseolus vulgaris HOM05D006620 ORTHO05D008921 2.2e-236 822.0 447 88.4
arahy.Tifrunner.gnm1.ann1.68MQ8I Arachis hypogaea HOM05D006620 ORTHO05D008921 5.5e-235 817.4 471 84.3
Lalb_Chr01g0011271 Lupinus albus HOM05D006620 ORTHO05D008921 2.8e-234 815.1 449 86.6
CiPaw.02G103900 Carya illinoinensis HOM05D006620 ORTHO05D008921 4.4e-232 807.7 461 84.4
arahy.Tifrunner.gnm1.ann1.8GH2US Arachis hypogaea HOM05D006620 ORTHO05D008921 3.7e-231 804.7 430 88.4
QL06p022330 Quercus lobata HOM05D006620 ORTHO05D008921 3.7e-231 804.7 466 83.7
Actinidia25091 Actinidia chinensis HOM05D006620 ORTHO05D008921 1.6e-229 799.3 455 84.4
Atru.chr4.1848 Acer truncatum HOM05D006620 ORTHO05D008921 1.7e-228 795.8 453 85.2
GSVIVG01028992001 Vitis vinifera HOM05D006620 ORTHO05D008921 2.3e-228 795.4 450 85.1
CSS0026751 Camellia sinensis var. sinensis HOM05D006620 ORTHO05D008921 2.9e-228 795.0 467 82.7
Manes.15G048100 Manihot esculenta HOM05D006620 ORTHO05D008921 5.0e-228 794.3 460 83.5
Gohir.D10G146800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 4.3e-227 791.2 433 85.9
Duzib151G1212 Durio zibethinus HOM05D006620 ORTHO05D008921 5.6e-227 790.8 434 85.5
Gohir.A10G119800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 9.5e-227 790.0 454 83.3
Hma1.2p1_1241F.1_g269780 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 1.2e-226 789.6 433 86.4
FvH4_4g05310 Fragaria vesca HOM05D006620 ORTHO05D008921 3.6e-226 788.1 424 88.0
Thecc.04G218300 Theobroma cacao HOM05D006620 ORTHO05D008921 4.7e-226 787.7 433 85.2
Cc03_g07000 Coffea canephora HOM05D006620 ORTHO05D008921 6.1e-226 787.3 450 83.6
TAR365G0583 Trochodendron aralioides HOM05D006620 ORTHO05D008921 6.1e-226 787.3 461 81.8
Cpa.g.sc59.55 Carica papaya HOM05D006620 ORTHO05D008921 8.0e-226 786.9 461 82.6
FAN17G2880 Fragaria x ananassa HOM05D006620 ORTHO05D008921 2.3e-225 785.4 437 86.0
RcHm_v2.0_Chr4g0396281 Rosa chinensis HOM05D006620 ORTHO05D008921 3.0e-225 785.0 424 88.2
SalBow2G2385 Salvia bowleyana HOM05D006620 ORTHO05D008921 3.0e-225 785.0 452 83.2
Ciclev10004924m.g Citrus clementina HOM05D006620 ORTHO05D008921 4.0e-225 784.6 459 83.2
FAN12G0711 Fragaria x ananassa HOM05D006620 ORTHO05D008921 4.0e-225 784.6 438 85.8
Potri.010G062300 Populus trichocarpa HOM05D006620 ORTHO05D008921 5.2e-225 784.3 433 85.7
CANSAT78G1778 Cannabis sativa HOM05D006620 ORTHO05D008921 2.6e-224 781.9 456 82.5
Prupe.1G054600 Prunus persica HOM05D006620 ORTHO05D008921 4.4e-224 781.2 424 87.3
Sopen09g034080 Solanum pennellii HOM05D006620 ORTHO05D008921 4.4e-224 781.2 454 82.2
CAN.G812.44 Capsicum annuum HOM05D006620 ORTHO05D008921 5.7e-224 780.8 456 82.5
Migut.G00599 Erythranthe guttata HOM05D006620 ORTHO05D008921 5.7e-224 780.8 455 82.4
Dinv29777 Davidia involucrata HOM05D006620 ORTHO05D008921 7.5e-224 780.4 456 82.2
MD13G1227100 Malus domestica HOM05D006620 ORTHO05D008921 7.5e-224 780.4 458 83.2
PGR142G1067 Punica granatum HOM05D006620 ORTHO05D008921 7.5e-224 780.4 424 87.3
SGA_v2.0_scaffold57G20185 Striga asiatica HOM05D006620 ORTHO05D008921 7.5e-224 780.4 443 83.3
CsaV3_3G011480 Cucumis sativus L. HOM05D006620 ORTHO05D008921 1.3e-223 779.6 453 81.7
PSO764G0126 Papaver somniferum HOM05D006620 ORTHO05D008921 2.2e-223 778.9 424 86.6
Oeu024839.2 Olea europaea HOM05D006620 ORTHO05D008921 4.9e-223 777.7 452 82.1
Nn1g03061 Nelumbo nucifera HOM05D006620 ORTHO05D008921 1.4e-222 776.2 463 80.6
ClCG05G003790 Citrullus lanatus HOM05D006620 ORTHO05D008921 2.4e-222 775.4 454 81.7
FAN07G1877 Fragaria x ananassa HOM05D006620 ORTHO05D008921 2.4e-222 775.4 424 87.3
THA.LOC104801056 Tarenaya hassleriana HOM05D006620 ORTHO05D008921 2.4e-222 775.4 452 82.1
Aqoxy5G00083 Aquilegia oxysepala HOM05D006620 ORTHO05D008921 4.1e-222 774.6 457 80.7
MELO3C006358.2 Cucumis melo HOM05D006620 ORTHO05D008921 9.2e-222 773.5 452 81.9
DCAR_002286 Daucus carota HOM05D006620 ORTHO05D008921 2.7e-221 771.9 482 78.4
Sed0017900 Sechium edule HOM05D006620 ORTHO05D008921 1.3e-220 769.6 453 80.4
HanXRQChr07g0185841 Helianthus annuus HOM05D006620 ORTHO05D008921 3.9e-220 768.1 442 82.6
Gorai.011G164100 Gossypium raimondii HOM05D006620 ORTHO05D008921 5.0e-220 767.7 455 81.5
Lsat_1_v5_gn_6_61660 Lactuca sativa HOM05D006620 ORTHO05D008921 5.0e-220 767.7 442 82.6
TWI53G1958 Tripterygium wilfordii HOM05D006620 ORTHO05D008921 4.3e-219 764.6 455 80.0
Thhalv10007576m.g Eutrema salsugineum HOM05D006620 ORTHO05D008921 7.3e-219 763.8 458 81.0
PSO832G4215 Papaver somniferum HOM05D006620 ORTHO05D008921 1.2e-218 763.1 428 84.6
AL1G14300 Arabidopsis lyrata HOM05D006620 ORTHO05D008921 1.8e-217 759.2 457 80.7
Carub.0001s0385 Capsella rubella HOM05D006620 ORTHO05D008921 1.8e-217 759.2 460 80.0
AT1G04620 Arabidopsis thaliana HOM05D006620 ORTHO05D008921 4.0e-217 758.1 464 79.3
Sp1g03450 Schrenkiella parvula HOM05D006620 ORTHO05D008921 4.0e-217 758.1 456 80.7
ECA233G0386 Erigeron canadensis HOM05D006620 ORTHO05D008921 5.2e-217 757.7 414 86.0
C05p02810 Brassica napus HOM05D006620 ORTHO05D008921 8.9e-217 756.9 424 84.0
SpUn0217_0010 Schrenkiella parvula HOM05D006620 ORTHO05D008921 1.2e-216 756.5 444 81.1
CARHR003970 Cardamine hirsuta HOM05D006620 ORTHO05D008921 1.5e-216 756.1 466 79.0
A10p03050 Brassica napus HOM05D006620 ORTHO05D008921 3.4e-216 755.0 424 84.0
BolC5t29064H Brassica oleracea HOM05D006620 ORTHO05D008921 3.4e-216 755.0 424 83.7
BraA10t42578Z Brassica rapa HOM05D006620 ORTHO05D008921 4.4e-216 754.6 459 79.7
unitig_899.g14858 Utricularia gibba HOM05D006620 ORTHO05D008921 5.4e-214 747.7 473 76.1
CDE09G0604 Ceratophyllum demersum HOM05D006620 ORTHO05D008921 2.0e-213 745.7 425 82.1
Lj3A630T51 Lonicera japonica HOM05D006620 ORTHO05D008921 2.0e-213 745.7 434 82.7
HPP92_009009 Vanilla planifolia HOM05D006620 ORTHO05D008921 8.6e-212 740.3 436 80.3
ATR0787G041 Amborella trichopoda HOM05D006620 ORTHO05D008921 5.6e-211 737.6 455 78.0
Zm00001eb038650 Zea mays HOM05D006620 ORTHO05D008921 3.6e-210 734.9 426 81.2
COL.COLO4_34324 Corchorus olitorius HOM05D006620 ORTHO05D008921 1.4e-209 733.0 452 78.5
AUR62043860 Chenopodium quinoa HOM05D006620 ORTHO05D008921 4.0e-209 731.5 452 77.0
Peaxi162Scf00125g00710 Petunia axillaris HOM05D006620 ORTHO05D008921 3.7e-207 724.9 401 85.3
Pp3c2_21860 Physcomitrium patens HOM05D006620 ORTHO05D008921 7.1e-206 720.7 437 77.1
AagrBONN_evm.TU.Sc2ySwM_228.367 Anthoceros agrestis HOM05D006620 ORTHO05D008921 1.2e-205 719.9 421 79.6
SEGI_36405 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 2.7e-205 718.8 438 76.7
Ah.04g153440 Amaranthus hybridus HOM05D006620 ORTHO05D008921 6.6e-204 714.1 430 78.4
FAN22G0814 Fragaria x ananassa HOM05D006620 ORTHO05D008921 6.6e-204 714.1 472 76.3
Hund19263 Selenicereus undatus HOM05D006620 ORTHO05D008921 8.6e-204 713.8 420 80.5
vmacro00524 Vaccinium macrocarpon HOM05D006620 ORTHO05D008921 1.5e-203 713.0 500 71.2
MBI07_g21064_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D008921 2.5e-203 712.2 401 83.3
Mapoly0088s0008 Marchantia polymorpha HOM05D006620 ORTHO05D008921 1.4e-201 706.4 459 74.1
Rhsim09G0044600 Rhododendron simsii HOM05D006620 ORTHO05D008921 4.1e-198 694.9 453 75.5
Solyc09g091100.4 Solanum lycopersicum HOM05D006620 ORTHO05D008921 4.6e-197 691.4 382 86.1
AUR62035902 Chenopodium quinoa HOM05D006620 ORTHO05D008921 3.6e-194 681.8 422 77.0
Nitab4.5_0003287g0030 Nicotiana tabacum HOM05D006620 ORTHO05D008921 4.7e-194 681.4 479 72.0
Cfa014839 Carpinus fangiana HOM05D006620 ORTHO05D008921 6.9e-193 677.6 400 82.2
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.4e-192 675.2 556 64.0
Sc25g0004890 Simmondsia chinensis HOM05D006620 ORTHO05D008921 3.5e-189 665.2 391 81.8
Glyma.20G079901 Glycine max HOM05D006620 ORTHO05D008921 1.7e-188 662.9 357 88.8
CBR_g51515 Chara braunii HOM05D006620 ORTHO05D008921 3.6e-186 655.2 429 71.6
Aa31LG1G20250 Aethionema arabicum HOM05D006620 ORTHO05D008921 6.2e-186 654.4 387 81.1
Ca_11784_v3 Cicer arietinum L. HOM05D006620 ORTHO05D008921 3.2e-182 642.1 377 84.9
EL10Ac3g06742 Beta vulgaris HOM05D006620 ORTHO05D008921 5.4e-182 641.3 459 69.7
AUR62035337 Chenopodium quinoa HOM05D006620 ORTHO05D008921 2.7e-173 612.5 427 70.7
MCO15G577 Micromonas commoda HOM05D006620 ORTHO05D008921 5.8e-168 594.7 424 65.8
Cre11.g468700 Chlamydomonas reinhardtii HOM05D006620 ORTHO05D008921 9.3e-166 587.4 427 65.3
Cc03_g06790 Coffea canephora HOM05D006620 ORTHO05D008921 8.5e-159 564.3 500 60.6
Psat6g109520 Pisum sativum HOM05D006620 ORTHO05D008921 5.1e-156 555.1 296 93.6
PRCOL_00000047 Prasinoderma coloniale HOM05D006620 ORTHO05D008921 9.7e-139 497.7 374 63.9
Os04g0320100 Oryza sativa ssp. japonica HOM05D006620 ORTHO05D008921 1.1e-137 494.2 294 80.6
Haze_11525 Corylus avellana HOM05D006620 ORTHO05D008921 4.1e-137 492.3 271 86.3
Nitab4.5_0000451g0130 Nicotiana tabacum HOM05D006620 ORTHO05D008921 1.9e-134 483.4 447 56.8
Eucgr.H00112 Eucalyptus grandis HOM05D006620 ORTHO05D008921 1.4e-116 424.1 285 76.5
PGSC0003DMG401011586 Solanum tuberosum HOM05D006620 ORTHO05D008921 3.8e-66 256.5 147 80.3
Prupe.1G054400 Prunus persica HOM05D006620 ORTHO05D008921 9.3e-65 251.9 190 66.3
SEGI_09547 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 6.2e-61 239.2 147 74.1
Hma1.2p1_1241F.1_g269765 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 2.8e-37 160.6 97 74.2
Actinidia35928 Actinidia chinensis HOM05D006620 ORTHO05D000073 3.5e-27 127.1 70 85.7
SEGI_19589 Sequoiadendron giganteum HOM05D006620 ORTHO05D025789 5.9e-27 126.3 79 70.9
Ca_17765_v3 Cicer arietinum L. HOM05D006620 ORTHO05D044367 2.2e-21 107.8 57 87.7
COL.COLO4_07239 Corchorus olitorius HOM05D006620 ORTHO05D044367 2.8e-13 80.9 49 77.6
MBI15_g44046_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 3.5e-11 73.9 42 78.6
MBI12_g00604_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 1.0e-10 72.4 42 76.2
MBI11_g39495_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 1.3e-10 72.0 43 74.4
MELO3C028457.2 Cucumis melo HOM05D006620 ORTHO05D167913 1.0e-07 62.4 40 75.0


User provided reference genes

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