Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23943 Trifolium pratense HOM05D005453 ORTHO05D006520 2.0e-21 104.8 49 100.0
TPR.G29465 Trifolium pratense HOM05D005453 ORTHO05D006520 2.0e-21 104.8 49 100.0
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 2.7e-18 94.4 49 89.8
Medtr5g038210 Medicago truncatula HOM05D005453 ORTHO05D006520 5.0e-17 90.1 49 83.7
Hund25276 Selenicereus undatus HOM05D005453 ORTHO05D006520 4.0e-14 80.5 49 69.4
COL.COLO4_34957 Corchorus olitorius HOM05D005453 ORTHO05D006520 5.8e-13 76.6 49 65.3
Migut.L01350 Erythranthe guttata HOM05D005453 ORTHO05D006520 5.8e-13 76.6 49 67.3
Sc11g0001640 Simmondsia chinensis HOM05D005453 ORTHO05D006520 7.5e-13 76.3 49 69.4
EL10Ac6g13139 Beta vulgaris HOM05D005453 ORTHO05D006520 9.8e-13 75.9 49 67.3
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 9.8e-13 75.9 49 69.4
MSTRG.666 Avicennia marina HOM05D005453 ORTHO05D006520 1.3e-12 75.5 49 67.3
Duzib268G1123 Durio zibethinus HOM05D005453 ORTHO05D006520 1.3e-12 75.5 49 65.3
PGR102G2554 Punica granatum HOM05D005453 ORTHO05D006520 1.7e-12 75.1 49 67.3
Cpa.g.c42295 Carica papaya HOM05D005453 ORTHO05D006520 2.2e-12 74.7 49 63.3
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 2.2e-12 74.7 49 67.3
TWI75G0114 Tripterygium wilfordii HOM05D005453 ORTHO05D006520 2.2e-12 74.7 49 63.3
vmacro16321 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 2.9e-12 74.3 49 69.4
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 6.4e-12 73.2 49 65.3
MELO3C012058.2 Cucumis melo HOM05D005453 ORTHO05D006520 6.4e-12 73.2 49 65.3
CsaV3_5G032260 Cucumis sativus L. HOM05D005453 ORTHO05D006520 6.4e-12 73.2 49 65.3
Ciclev10031079m.g Citrus clementina HOM05D005453 ORTHO05D006520 8.3e-12 72.8 49 63.3
Hund05918 Selenicereus undatus HOM05D005453 ORTHO05D006520 8.3e-12 72.8 49 63.3
SGA_v2.0_scaffold163G38065 Striga asiatica HOM05D005453 ORTHO05D006520 8.3e-12 72.8 49 67.3
Glyma.01G041500 Glycine max HOM05D005453 ORTHO05D006520 1.1e-11 72.4 49 65.3
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 1.1e-11 72.4 49 61.2
Manes.01G191800 Manihot esculenta HOM05D005453 ORTHO05D006520 1.1e-11 72.4 49 61.2
Potri.010G034600 Populus trichocarpa HOM05D005453 ORTHO05D006520 1.1e-11 72.4 49 63.3
QL03p065960 Quercus lobata HOM05D005453 ORTHO05D006520 1.1e-11 72.4 49 63.3
Actinidia19854 Actinidia chinensis HOM05D005453 ORTHO05D006520 1.4e-11 72.0 49 63.3
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 1.4e-11 72.0 49 65.3
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 1.4e-11 72.0 49 63.3
BcaB07g32384 Brassica carinata HOM05D005453 ORTHO05D006520 1.9e-11 71.6 49 63.3
Atru.chr11.1865 Acer truncatum HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 61.2
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.4e-11 71.2 49 65.3
BcaC05g26346 Brassica carinata HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 63.3
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 2.4e-11 71.2 49 63.3
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 2.4e-11 71.2 49 63.3
BolC5t31089H Brassica oleracea HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 63.3
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 2.4e-11 71.2 49 63.3
Oeu057176.2 Olea europaea HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 65.3
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 65.3
TAR374G0997 Trochodendron aralioides HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 57.1
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 65.3
GSVIVG01020082001 Vitis vinifera HOM05D005453 ORTHO05D006520 2.4e-11 71.2 49 61.2
arahy.Tifrunner.gnm1.ann1.62035P Arachis hypogaea HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 61.2
arahy.Tifrunner.gnm1.ann1.7H81I7 Arachis hypogaea HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 61.2
Dinv34193 Davidia involucrata HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 67.3
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 63.3
Oeu011701.1 Olea europaea HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 63.3
Sabra08G0147800 Salix brachista HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 61.2
TAR622G1188 Trochodendron aralioides HOM05D005453 ORTHO05D006520 3.2e-11 70.9 49 61.2
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 4.1e-11 70.5 49 61.2
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 4.1e-11 70.5 49 61.2
AUR62026459 Chenopodium quinoa HOM05D005453 ORTHO05D006520 4.1e-11 70.5 49 61.2
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 4.1e-11 70.5 49 59.2
CSS0029199 Camellia sinensis var. sinensis HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 63.3
Gohir.A03G146000 Gossypium hirsutum HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 59.2
Gohir.D02G169300 Gossypium hirsutum HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 59.2
Gorai.005G189700 Gossypium raimondii HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 59.2
Rhsim12G0129300 Rhododendron simsii HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 63.3
Sed0004157 Sechium edule HOM05D005453 ORTHO05D006520 5.4e-11 70.1 49 59.2
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 7.0e-11 69.7 49 61.2
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 7.0e-11 69.7 49 61.2
Potri.008G194300 Populus trichocarpa HOM05D005453 ORTHO05D006520 7.0e-11 69.7 49 61.2
Sabra10G0030200 Salix brachista HOM05D005453 ORTHO05D006520 9.2e-11 69.3 49 61.2
MSTRG.7832 Avicennia marina HOM05D005453 ORTHO05D006520 1.2e-10 68.9 49 61.2
Nn3g17115 Nelumbo nucifera HOM05D005453 ORTHO05D006520 1.2e-10 68.9 49 67.3
Sp1g21710 Schrenkiella parvula HOM05D005453 ORTHO05D006520 1.2e-10 68.9 49 61.2
arahy.Tifrunner.gnm1.ann1.C864RN Arachis hypogaea HOM05D005453 ORTHO05D006520 1.6e-10 68.6 49 57.1
Eucgr.B03405 Eucalyptus grandis HOM05D005453 ORTHO05D006520 1.6e-10 68.6 49 59.2
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 1.6e-10 68.6 47 68.1
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 1.6e-10 68.6 49 59.2
Thecc.02G232200 Theobroma cacao HOM05D005453 ORTHO05D006520 1.6e-10 68.6 49 59.2
Haze_12074 Corylus avellana HOM05D005453 ORTHO05D006520 2.0e-10 68.2 49 61.2
Duzib248G1267 Durio zibethinus HOM05D005453 ORTHO05D006520 2.0e-10 68.2 47 59.6
PGSC0003DMG400026781 Solanum tuberosum HOM05D005453 ORTHO05D006520 2.0e-10 68.2 49 65.3
ATR0665G247 Amborella trichopoda HOM05D005453 ORTHO05D006520 3.5e-10 67.4 49 57.1
CANSAT64G2233 Cannabis sativa HOM05D005453 ORTHO05D006520 3.5e-10 67.4 49 57.1
Hma1.2p1_0265F.1_g106550 Hydrangea macrophylla HOM05D005453 ORTHO05D006520 3.5e-10 67.4 49 57.1
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 4.6e-10 67.0 49 55.1
Peaxi162Scf00026g02226 Petunia axillaris HOM05D005453 ORTHO05D006520 4.6e-10 67.0 49 65.3
Sopen01g006070 Solanum pennellii HOM05D005453 ORTHO05D006520 4.6e-10 67.0 49 65.3
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 59.2
Aqoxy3G03253 Aquilegia oxysepala HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 57.1
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 59.2
MD16G1079800 Malus domestica HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 55.1
Nitab4.5_0000679g0110 Nicotiana tabacum HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 63.3
Sed0006777 Sechium edule HOM05D005453 ORTHO05D006520 6.0e-10 66.6 49 57.1
Cfa009044 Carpinus fangiana HOM05D005453 ORTHO05D006520 1.0e-09 65.9 49 61.2
ECA234G1124 Erigeron canadensis HOM05D005453 ORTHO05D006520 1.7e-09 65.1 49 55.1
Nitab4.5_0002969g0050 Nicotiana tabacum HOM05D005453 ORTHO05D006520 1.7e-09 65.1 49 61.2
Solyc05g006930.3 Solanum lycopersicum HOM05D005453 ORTHO05D006520 1.7e-09 65.1 49 63.3
Sopen05g002890 Solanum pennellii HOM05D005453 ORTHO05D006520 1.7e-09 65.1 49 63.3
CAN.G827.6 Capsicum annuum HOM05D005453 ORTHO05D006520 2.3e-09 64.7 49 61.2
Nitab4.5_0002291g0010 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.3e-09 64.7 49 59.2
HanXRQChr08g0209161 Helianthus annuus HOM05D005453 ORTHO05D006520 5.0e-09 63.5 49 55.1
CiPaw.05G140600 Carya illinoinensis HOM05D005453 ORTHO05D006520 6.6e-09 63.2 49 59.2
Cc11_g13580 Coffea canephora HOM05D005453 ORTHO05D006520 6.6e-09 63.2 49 57.1
DCAR_031056 Daucus carota HOM05D005453 ORTHO05D006520 8.6e-09 62.8 49 51.0
PSO017G4002 Papaver somniferum HOM05D005453 ORTHO05D006520 8.6e-09 62.8 49 57.1
PGSC0003DMG400017617 Solanum tuberosum HOM05D005453 ORTHO05D006520 8.6e-09 62.8 49 59.2
PSO478G0523 Papaver somniferum HOM05D005453 ORTHO05D006520 1.5e-08 62.0 49 57.1
unitig_22.g6530 Utricularia gibba HOM05D005453 ORTHO05D006520 1.5e-08 62.0 49 53.1
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 1.9e-08 61.6 48 52.1
CDE06G1042 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 2.5e-08 61.2 49 53.1
Lsat_1_v5_gn_8_53620 Lactuca sativa HOM05D005453 ORTHO05D006520 3.3e-08 60.8 49 53.1
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 3.3e-08 60.8 49 57.1
Zm00001eb217200 Zea mays HOM05D005453 ORTHO05D006520 7.3e-08 59.7 49 46.9
Zm00001eb053230 Zea mays HOM05D005453 ORTHO05D006520 9.5e-08 59.3 49 46.9
FAN22G2419 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.6e-07 58.5 49 51.0
FvH4_4g32100 Fragaria vesca HOM05D005453 ORTHO05D006520 2.1e-07 58.2 49 49.0
FAN12G1353 Fragaria x ananassa HOM05D005453 ORTHO05D006520 2.1e-07 58.2 49 49.0
Os03g0686900 Oryza sativa ssp. japonica HOM05D005453 ORTHO05D006520 2.8e-07 57.8 49 51.0
RcHm_v2.0_Chr4g0440791 Rosa chinensis HOM05D005453 ORTHO05D006520 2.8e-07 57.8 49 49.0
SMO353G0350 Selaginella moellendorffii HOM05D005453 ORTHO05D006520 4.7e-07 57.0 49 49.0
SalBow2G2835 Salvia bowleyana HOM05D005453 ORTHO05D006520 8.1e-07 56.2 49 51.0
Mapoly0020s0141 Marchantia polymorpha HOM05D005453 ORTHO05D006520 3.1e-06 54.3 49 49.0
CAN.G27.11 Capsicum annuum HOM05D005453 ORTHO05D006520 6.8e-06 53.1 49 51.0
SEGI_23512 Sequoiadendron giganteum HOM05D005453 ORTHO05D006520 6.8e-06 53.1 32 71.9


User provided reference genes

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