Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 0.0e+00 1276.9 659 100.0
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 9.6e-196 687.6 417 83.7
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.4e-194 682.9 420 82.6
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.3e-184 650.6 381 86.6
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.5e-169 600.5 422 73.5
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 6.5e-168 595.1 399 74.9
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 7.4e-164 581.6 421 71.0
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 9.7e-164 581.3 412 71.4
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.1e-162 577.8 412 71.4
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.6e-161 573.2 394 73.4
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.9e-159 567.0 389 72.5
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 9.4e-159 564.7 382 73.6
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.2e-158 564.3 376 73.9
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 1.2e-158 564.3 376 74.7
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 6.1e-158 562.0 390 71.5
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 7.4e-156 555.1 418 67.5
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.2e-155 553.5 400 70.8
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 2.2e-155 553.5 418 69.1
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 2.8e-155 553.1 418 67.9
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.8e-155 553.1 374 72.7
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.7e-155 552.7 413 69.7
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 9.1e-154 548.1 486 61.5
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.2e-153 547.7 412 67.0
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 4.5e-153 545.8 408 69.6
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.9e-153 545.4 400 69.2
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 7.7e-153 545.0 380 73.2
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.0e-152 544.7 384 70.3
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.7e-152 543.9 418 66.0
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 8.5e-152 541.6 374 70.9
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.1e-151 541.2 400 69.8
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-151 540.0 400 69.5
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 4.2e-151 539.3 381 72.2
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 4.2e-151 539.3 408 68.4
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-150 537.7 421 65.1
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.8e-149 533.9 407 66.3
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 3.0e-149 533.1 377 69.8
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.0e-149 533.1 373 71.3
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 3.9e-149 532.7 394 67.5
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.2e-149 532.3 374 70.3
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 8.8e-149 531.6 375 68.3
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 1.1e-148 531.2 432 62.7
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.1e-148 531.2 371 69.5
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.5e-148 530.8 445 60.7
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.0e-148 530.4 383 68.7
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 2.6e-148 530.0 377 68.4
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 2.6e-148 530.0 377 70.0
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 4.4e-148 529.3 412 64.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 4.4e-148 529.3 398 66.6
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 4.4e-148 529.3 398 66.6
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 4.4e-148 529.3 364 73.1
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 5.7e-148 528.9 404 66.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 5.7e-148 528.9 389 69.7
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 5.7e-148 528.9 379 71.0
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 9.7e-148 528.1 383 72.1
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 9.7e-148 528.1 408 65.9
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.3e-147 527.7 418 63.9
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.2e-147 526.9 374 69.0
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 2.8e-147 526.6 377 69.8
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.7e-147 526.2 381 68.0
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 4.8e-147 525.8 374 69.5
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.1e-146 524.6 374 69.3
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 5.3e-146 522.3 397 68.5
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 1.2e-145 521.2 381 67.7
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 3.5e-145 519.6 377 69.5
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 7.7e-145 518.5 406 69.0
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.7e-144 517.3 423 62.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.8e-144 516.2 365 69.6
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 3.8e-144 516.2 379 67.8
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 8.5e-144 515.0 370 69.5
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.1e-143 514.6 377 69.0
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.9e-143 513.8 392 67.3
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.5e-143 513.5 409 62.1
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.5e-143 513.5 370 69.2
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 9.4e-143 511.5 393 64.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 3.6e-142 509.6 370 68.9
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.6e-142 509.6 387 66.1
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 6.1e-142 508.8 372 68.0
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 6.1e-142 508.8 390 65.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 6.8e-141 505.4 398 65.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 6.8e-141 505.4 387 66.7
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 8.8e-141 505.0 368 69.3
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.2e-140 504.6 416 62.7
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 4.4e-140 502.7 380 67.9
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 3.7e-139 499.6 397 65.5
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.7e-139 499.6 369 66.9
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.7e-139 499.6 369 66.9
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 5.9e-137 492.3 371 68.2
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.3e-136 491.1 356 68.8
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.1e-135 488.0 382 62.8
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.0e-133 481.5 370 63.8
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 2.6e-132 476.9 370 64.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.7e-131 473.0 373 64.3
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.4e-130 471.1 373 64.3
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.4e-130 470.3 371 64.7
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.9e-127 460.7 390 60.0
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 5.2e-125 452.6 382 59.4
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.1e-122 444.9 419 58.2
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.9e-120 436.4 371 61.7
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 5.2e-117 426.0 389 57.6
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 8.9e-117 425.2 364 60.7
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.0e-116 424.1 384 58.6
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.1e-114 418.3 371 57.7
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 4.1e-114 416.4 373 56.0
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 7.0e-114 415.6 390 54.6
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 2.0e-113 414.1 385 55.1
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.6e-108 397.1 376 53.2
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 2.2e-107 394.0 374 55.3
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.9e-103 380.9 377 50.1
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 8.3e-99 365.5 378 52.9
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.6e-94 351.3 321 58.9
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 5.8e-92 342.8 287 63.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.9e-91 339.7 371 49.3
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.4e-90 337.4 223 71.3
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.3e-86 325.1 317 53.6
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 8.1e-86 322.4 265 60.8
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 1.4e-77 295.0 395 42.3
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.3e-72 277.7 179 76.5
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.3e-72 277.7 179 76.5
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 5.3e-61 240.0 375 38.9
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.2e-54 218.0 431 35.5
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 4.8e-54 216.9 168 63.1
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.7e-43 181.8 117 72.6
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.2e-38 162.9 136 60.3
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 2.4e-37 161.4 82 93.9
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 4.1e-37 160.6 400 32.8
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-36 158.3 128 68.0
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.5e-35 152.9 148 56.1
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 3.8e-27 127.5 393 30.3
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 6.6e-11 73.6 78 51.3
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-10 70.9 73 50.7
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-10 70.9 73 50.7
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 9.5e-10 69.7 86 45.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.8e-09 68.2 386 24.1
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 2.3e-08 65.1 281 24.9
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 1.2e-07 62.8 64 53.1
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 1.2e-07 62.8 64 53.1
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 1.2e-07 62.8 64 53.1
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.4e-07 61.2 405 23.0
arahy.Tifrunner.gnm1.ann1.1LNC0L Arachis hypogaea HOM05D001819 ORTHO05D001730 3.7e-06 57.8 114 39.5


User provided reference genes

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