Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 4.8e-91 337.8 169 100.0
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.0e-81 305.8 169 88.2
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.0e-81 305.8 169 88.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 3.4e-81 305.1 169 88.2
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.0e-80 303.5 169 87.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.0e-80 303.5 169 87.0
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.7e-80 302.8 169 87.0
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 84.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 84.6
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 85.2
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.2e-79 298.5 167 85.6
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 85.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 85.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 84.0
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 85.8
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 83.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.6e-78 295.0 169 84.6
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.6e-78 294.7 166 87.3
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-77 293.1 166 86.1
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.3e-77 292.4 168 82.1
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 82.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 82.2
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 82.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 82.8
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 8.8e-77 290.4 168 82.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 83.4
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 82.2
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 82.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.3e-76 288.5 168 82.1
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 80.4
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-75 285.0 166 80.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 82.5
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 82.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 82.5
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 82.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.2e-75 283.9 166 82.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 81.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 80.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 80.5
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 81.7
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 80.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 4.1e-74 281.6 168 79.2
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 79.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 79.3
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 80.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 80.5
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 78.7
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 79.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 79.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 78.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-73 279.6 194 74.7
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.4e-73 278.5 169 79.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 79.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.5e-73 278.1 168 77.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 5.9e-73 277.7 167 77.8
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.9e-73 277.7 168 77.4
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 7.7e-73 277.3 169 78.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.7e-73 277.3 169 78.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 78.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 80.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.3e-72 276.6 166 78.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.7e-72 276.2 167 79.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 78.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.2e-72 275.8 169 77.5
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 78.7
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 79.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 5.0e-72 274.6 148 89.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 78.1
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 76.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-71 273.1 166 77.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-71 272.3 183 74.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.2e-71 271.9 169 76.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-71 271.9 183 74.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-71 271.9 183 74.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.2e-71 271.6 169 78.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.5e-71 271.2 169 76.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.2e-70 270.0 169 76.3
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 75.7
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.6e-70 269.6 149 85.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 3.6e-70 268.5 169 75.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 4.7e-70 268.1 186 71.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.1e-70 267.7 169 75.1
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 7.9e-70 267.3 182 72.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.8e-69 266.2 167 77.2
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-69 266.2 150 83.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.1e-69 264.6 169 76.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.1e-69 264.6 169 76.9
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.7e-69 264.2 169 77.5
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 8.8e-69 263.8 192 69.3
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.1e-68 263.5 149 82.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.3e-67 260.0 169 73.4
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.7e-67 259.6 168 69.6
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.2e-67 259.2 149 81.9
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 6.3e-67 257.7 150 82.7
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.3e-67 257.7 143 83.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 8.2e-67 257.3 169 74.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 8.2e-67 257.3 167 71.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.2e-67 257.3 149 80.5
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.1e-66 256.9 207 62.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.4e-66 255.8 169 72.8
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.3e-66 254.6 158 77.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 7.0e-66 254.2 214 60.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.2e-65 253.4 149 79.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.5e-65 251.9 166 73.5
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.5e-65 251.5 158 76.6
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.9e-64 248.8 149 81.2
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.9e-64 248.8 145 82.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.1e-63 246.9 168 67.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.6e-62 243.0 147 76.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.7e-62 241.5 153 75.8
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.0e-61 240.4 154 74.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-61 240.4 177 68.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.3e-61 239.2 169 69.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.5e-60 236.5 149 77.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.5e-60 236.5 239 53.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.0e-60 236.1 170 72.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.3e-59 233.4 168 67.3
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.7e-59 233.0 126 84.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.4e-58 229.9 149 76.5
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.4e-58 229.2 166 74.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 3.5e-57 225.3 152 73.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 3.8e-56 221.9 124 82.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 8.5e-56 220.7 153 72.5
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 3.2e-55 218.8 167 65.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.7e-54 214.9 168 66.7
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-53 213.4 132 78.0
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.8e-53 213.0 123 79.7
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.8e-51 204.9 124 82.3
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-50 203.4 166 64.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.1e-50 201.8 188 53.2
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 7.0e-50 201.1 149 71.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.2e-49 200.3 155 60.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 5.9e-49 198.0 124 77.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.3e-48 196.8 124 79.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-48 196.4 121 79.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-48 196.4 121 79.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-48 196.1 121 78.5
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.8e-48 195.3 121 78.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-47 192.2 123 75.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.5e-47 191.4 141 68.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.2e-44 183.7 146 65.8
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-42 176.8 134 60.4
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.5e-41 171.8 106 81.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 6.1e-38 161.4 90 80.0
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.0e-37 158.7 90 83.3
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-35 151.4 94 81.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 6.6e-32 141.4 83 81.9
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.0e-29 132.1 103 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.4e-27 124.8 98 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.4e-26 123.6 100 61.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-25 118.6 82 69.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.9e-24 115.5 118 54.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-23 113.2 73 75.3
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.2e-22 110.5 75 70.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.6e-22 110.2 78 67.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.8e-21 104.8 74 67.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.4e-18 96.3 64 71.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.1e-17 93.2 160 35.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-16 90.1 65 70.8
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 3.3e-15 85.9 130 37.7
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-14 81.3 49 81.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-14 81.3 49 81.6
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.8e-13 78.2 108 50.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.8e-12 75.1 44 70.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.7e-09 66.2 38 73.7


User provided reference genes

Program Settings