Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23165 Trifolium pratense HOM05D066294 ORTHO05D000356 2.7e-97 358.6 176 100.0
TPR.G40330 Trifolium pratense HOM05D066294 ORTHO05D000356 4.1e-53 211.8 168 63.1
TPR.G23162 Trifolium pratense HOM05D000502 ORTHO05D000356 1.1e-37 160.6 173 53.2
Medtr5g036080 Medicago truncatula HOM05D000502 ORTHO05D000356 1.4e-32 143.7 162 51.2
TPR.G23168 Trifolium pratense HOM05D000502 ORTHO05D000356 2.4e-29 132.9 161 47.8
Phvul.002G076500 Phaseolus vulgaris HOM05D000502 ORTHO05D000356 1.1e-24 117.5 163 42.3
Glyma.02G027900 Glycine max HOM05D000502 ORTHO05D000356 4.0e-24 115.5 161 43.5
Lj2g0007154 Lotus japonicus HOM05D000502 ORTHO05D000356 4.3e-18 95.5 165 37.0
Lj2g0027894 Lotus japonicus HOM05D000502 ORTHO05D000356 4.3e-18 95.5 165 37.0
LjContig00170g0009972 Lotus japonicus HOM05D000502 ORTHO05D000356 4.3e-18 95.5 165 37.0
TPR.G19406 Trifolium pratense HOM05D000502 ORTHO05D000356 5.6e-18 95.1 153 39.9
Psat2g113320 Pisum sativum HOM05D000502 ORTHO05D000356 3.6e-17 92.4 169 36.1
Lj2g0006574 Lotus japonicus HOM05D000502 ORTHO05D000356 4.9e-14 82.0 168 33.9
PGSC0003DMG400001924 Solanum tuberosum HOM05D000502 ORTHO05D000356 7.9e-12 74.7 153 35.9
TWI18G1226 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.9e-11 72.4 171 32.7
Atru.chr11.1945 Acer truncatum HOM05D000502 ORTHO05D000356 5.1e-11 72.0 175 32.0
unitig_22.g6478 Utricularia gibba HOM05D000502 ORTHO05D000356 1.5e-10 70.5 174 29.9
CSS0032899 Camellia sinensis var. sinensis HOM05D000502 ORTHO05D000356 3.3e-10 69.3 168 32.1
Psat2g112760 Pisum sativum HOM05D000502 ORTHO05D000356 7.4e-10 68.2 170 33.5
PGR119G0490 Punica granatum HOM05D000502 ORTHO05D000356 2.1e-09 66.6 175 29.7
TWI75G0054 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 2.1e-09 66.6 174 30.5
TWI75G1323 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 2.1e-09 66.6 174 30.5
TWI75G1727 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 2.1e-09 66.6 174 30.5
Thhalv10023823m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 2.8e-09 66.2 157 31.8
Potri.012G104600 Populus trichocarpa HOM05D000502 ORTHO05D000356 2.8e-09 66.2 176 31.8
Potri.015G103900 Populus trichocarpa HOM05D000502 ORTHO05D000356 2.8e-09 66.2 173 32.4
Cc11_g14130 Coffea canephora HOM05D000502 ORTHO05D000356 3.7e-09 65.9 164 34.8
AT1G59970 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 6.2e-09 65.1 149 32.2
Sabra15G0123700 Salix brachista HOM05D000502 ORTHO05D000356 6.2e-09 65.1 173 32.4
Ca_27510_v3 Cicer arietinum L. HOM05D000502 ORTHO05D000356 8.1e-09 64.7 186 32.8
Medtr5g036410 Medicago truncatula HOM05D000502 ORTHO05D000356 8.1e-09 64.7 181 32.6
A09p17810 Brassica napus HOM05D000502 ORTHO05D000356 1.1e-08 64.3 132 34.1
MD13G1085700 Malus domestica HOM05D000502 ORTHO05D000356 1.1e-08 64.3 176 30.1
Prupe.1G261000 Prunus persica HOM05D000502 ORTHO05D000356 1.1e-08 64.3 176 32.4
CDE11G0500 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.4e-08 63.9 154 31.8
Duzib268G1852 Durio zibethinus HOM05D000502 ORTHO05D000356 1.4e-08 63.9 178 29.8
PSO170G2276 Papaver somniferum HOM05D000502 ORTHO05D000356 1.4e-08 63.9 170 29.4
RcHm_v2.0_Chr4g0444791 Rosa chinensis HOM05D000502 ORTHO05D000356 1.4e-08 63.9 148 33.1
PSO455G0094 Papaver somniferum HOM05D000502 ORTHO05D000356 1.8e-08 63.5 170 30.0
Haze_12126 Corylus avellana HOM05D000502 ORTHO05D000356 2.4e-08 63.2 173 29.5
Migut.E00135 Erythranthe guttata HOM05D000502 ORTHO05D000356 2.4e-08 63.2 134 33.6
FAN07G2497 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.4e-08 63.2 160 31.9
FAN22G0541 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.4e-08 63.2 160 31.9
Lj3g0025266 Lotus japonicus HOM05D000502 ORTHO05D000356 2.4e-08 63.2 177 30.5
BraA09t37414Z Brassica rapa HOM05D000502 ORTHO05D000356 3.1e-08 62.8 132 33.3
CDE02G1719 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 3.1e-08 62.8 140 32.9
FvH4_4g35180 Fragaria vesca HOM05D000502 ORTHO05D000356 3.1e-08 62.8 160 31.9
FAN17G2703 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.1e-08 62.8 160 31.9
QL03p067186 Quercus lobata HOM05D000502 ORTHO05D000356 3.1e-08 62.8 175 30.9
Sabra12G0077000 Salix brachista HOM05D000502 ORTHO05D000356 3.1e-08 62.8 176 30.7
SalBow2G0295 Salvia bowleyana HOM05D000502 ORTHO05D000356 3.1e-08 62.8 148 33.8
PGSC0003DMG400004818 Solanum tuberosum HOM05D000502 ORTHO05D000356 3.1e-08 62.8 130 30.8
BcaC04g22202 Brassica carinata HOM05D000502 ORTHO05D000356 4.0e-08 62.4 131 32.8
C09p22160 Brassica napus HOM05D000502 ORTHO05D000356 4.0e-08 62.4 131 32.8
BolC9t55131H Brassica oleracea HOM05D000502 ORTHO05D000356 4.0e-08 62.4 131 32.8
Phvul.002G076600 Phaseolus vulgaris HOM05D000502 ORTHO05D000356 4.0e-08 62.4 170 31.2
Sopen08g027030 Solanum pennellii HOM05D000502 ORTHO05D000356 4.0e-08 62.4 130 30.8
BcaB07g31192 Brassica carinata HOM05D000502 ORTHO05D000356 5.3e-08 62.0 157 28.7
FAN12G3189 Fragaria x ananassa HOM05D000502 ORTHO05D000356 5.3e-08 62.0 160 31.9
SalBow2G2082 Salvia bowleyana HOM05D000502 ORTHO05D000356 5.3e-08 62.0 148 33.8
HanXRQChr13g0422851 Helianthus annuus HOM05D000502 ORTHO05D000356 6.9e-08 61.6 159 28.9
Nn3g17027 Nelumbo nucifera HOM05D000502 ORTHO05D000356 6.9e-08 61.6 160 31.2
TPR.G17312 Trifolium pratense HOM05D000502 ORTHO05D000356 6.9e-08 61.6 178 31.5
Nitab4.5_0000257g0040 Nicotiana tabacum HOM05D000502 ORTHO05D000356 9.0e-08 61.2 163 33.7
AL2G16780 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 1.2e-07 60.8 123 33.3
MSTRG.15498 Avicennia marina HOM05D000502 ORTHO05D000356 1.2e-07 60.8 163 27.6
HanXRQChr17g0570141 Helianthus annuus HOM05D000502 ORTHO05D000356 1.2e-07 60.8 130 32.3
Peaxi162Scf00174g00054 Petunia axillaris HOM05D000502 ORTHO05D000356 1.5e-07 60.5 152 28.9
TAR629G2860 Trochodendron aralioides HOM05D000502 ORTHO05D000356 1.5e-07 60.5 175 30.3
FAN07G1343 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.0e-07 60.1 161 30.4
Prupe.3G277600 Prunus persica HOM05D000502 ORTHO05D000356 2.0e-07 60.1 172 26.7
TPR.G17338 Trifolium pratense HOM05D000502 ORTHO05D000356 2.0e-07 60.1 145 31.0
TAR622G0318 Trochodendron aralioides HOM05D000502 ORTHO05D000356 2.0e-07 60.1 169 30.2
Manes.01G195600 Manihot esculenta HOM05D000502 ORTHO05D000356 2.6e-07 59.7 141 34.0
VMungo1215G1999 Vigna mungo HOM05D000502 ORTHO05D000356 2.6e-07 59.7 172 31.4
ATR0712G011 Amborella trichopoda HOM05D000502 ORTHO05D000356 3.4e-07 59.3 165 28.5
Thecc.02G240500 Theobroma cacao HOM05D000502 ORTHO05D000356 3.4e-07 59.3 176 27.8
BcaC05g26313 Brassica carinata HOM05D000502 ORTHO05D000356 7.6e-07 58.2 168 27.4
C05p23260 Brassica napus HOM05D000502 ORTHO05D000356 7.6e-07 58.2 168 27.4
BolC5t31026H Brassica oleracea HOM05D000502 ORTHO05D000356 7.6e-07 58.2 168 27.4
THA.LOC104812775 Tarenaya hassleriana HOM05D000502 ORTHO05D000356 7.6e-07 58.2 169 25.4
Glyma.02G027800 Glycine max HOM05D000502 ORTHO05D000356 9.9e-07 57.8 172 30.8
AUR62013708 Chenopodium quinoa HOM05D000502 ORTHO05D000356 1.3e-06 57.4 168 23.8
Migut.L01389 Erythranthe guttata HOM05D000502 ORTHO05D000356 1.3e-06 57.4 163 33.7
Nn4g22921 Nelumbo nucifera HOM05D000502 ORTHO05D000356 1.3e-06 57.4 173 28.3
Peaxi162Scf01141g00008 Petunia axillaris HOM05D000502 ORTHO05D000356 1.3e-06 57.4 136 34.6
Rhsim08G0058000 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.3e-06 57.4 178 26.4
Sc04g0008810 Simmondsia chinensis HOM05D000502 ORTHO05D000356 1.3e-06 57.4 132 30.3
DCAR_013963 Daucus carota HOM05D000502 ORTHO05D000356 1.7e-06 57.0 187 24.6
Duzib251G0396 Durio zibethinus HOM05D000502 ORTHO05D000356 1.7e-06 57.0 165 29.1
Medtr5g036360 Medicago truncatula HOM05D000502 ORTHO05D000356 1.7e-06 57.0 154 29.9
PGR044G2211 Punica granatum HOM05D000502 ORTHO05D000356 1.7e-06 57.0 163 25.8
Ah.07g198660 Amaranthus hybridus HOM05D000502 ORTHO05D000356 2.2e-06 56.6 166 27.7
HanXRQChr12g0382491 Helianthus annuus HOM05D000502 ORTHO05D000356 2.2e-06 56.6 146 32.2
Rhsim08G0097000 Rhododendron simsii HOM05D000502 ORTHO05D000356 2.2e-06 56.6 192 25.5
Aa31LG2G10280 Aethionema arabicum HOM05D000502 ORTHO05D000356 2.9e-06 56.2 138 31.9
CiPaw.13G030700 Carya illinoinensis HOM05D000502 ORTHO05D000356 2.9e-06 56.2 125 28.8
Thhalv10007920m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 2.9e-06 56.2 175 26.3
AT1G70170 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 3.8e-06 55.8 179 30.2
A09p40750 Brassica napus HOM05D000502 ORTHO05D000356 3.8e-06 55.8 169 27.2
BraA09t39569Z Brassica rapa HOM05D000502 ORTHO05D000356 3.8e-06 55.8 169 27.2
CARHR024410 Cardamine hirsuta HOM05D000502 ORTHO05D000356 3.8e-06 55.8 177 25.4
ClCG00G001720 Citrullus lanatus HOM05D000502 ORTHO05D000356 3.8e-06 55.8 184 31.0
ClCG09G018620 Citrullus lanatus HOM05D000502 ORTHO05D000356 3.8e-06 55.8 184 31.0
COL.COLO4_12463 Corchorus olitorius HOM05D000502 ORTHO05D000356 3.8e-06 55.8 150 28.0
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.8e-06 55.8 118 30.5
FvH4_5g19070 Fragaria vesca HOM05D000502 ORTHO05D000356 3.8e-06 55.8 149 30.2
FAN08G3531 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.8e-06 55.8 149 30.2
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.8e-06 55.8 149 30.2
FAN18G1291 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.8e-06 55.8 149 30.2
FAN18G3934 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.8e-06 55.8 149 30.2
PGSC0003DMG400041373 Solanum tuberosum HOM05D000502 ORTHO05D000356 3.8e-06 55.8 159 30.8
MSTRG.7861 Avicennia marina HOM05D000502 ORTHO05D000356 4.9e-06 55.5 173 30.6
Ciclev10031870m.g Citrus clementina HOM05D000502 ORTHO05D000356 4.9e-06 55.5 179 30.2
CsaV3_5G025440 Cucumis sativus L. HOM05D000502 ORTHO05D000356 4.9e-06 55.5 172 28.5
ClCG09G022150 Citrullus lanatus HOM05D000502 ORTHO05D000356 6.4e-06 55.1 158 30.4
Gohir.A05G319300 Gossypium hirsutum HOM05D000502 ORTHO05D000356 6.4e-06 55.1 175 25.7
Gohir.D05G321500 Gossypium hirsutum HOM05D000502 ORTHO05D000356 6.4e-06 55.1 175 25.7
Hma1.2p1_0316F.1_g123040 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 6.4e-06 55.1 157 26.1
Lalb_Chr05g0217261 Lupinus albus HOM05D000502 ORTHO05D000356 6.4e-06 55.1 177 29.4
Aqoxy3G00885 Aquilegia oxysepala HOM05D000502 ORTHO05D000356 8.4e-06 54.7 157 27.4
Medtr5g036290 Medicago truncatula HOM05D000502 ORTHO05D000356 8.4e-06 54.7 154 28.6
RcHm_v2.0_Chr2g0170251 Rosa chinensis HOM05D000502 ORTHO05D000356 8.4e-06 54.7 171 24.0


User provided reference genes

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