Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.5e-198 696.0 362 100.0
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 3.9e-175 618.2 363 88.4
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 5.7e-158 561.2 373 79.1
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 5.3e-156 554.7 374 78.9
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 2.6e-155 552.4 373 78.0
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.5e-155 552.0 372 78.5
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 7.5e-150 534.3 375 76.5
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 2.6e-142 509.2 374 73.5
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 3.5e-131 472.2 372 71.0
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.1e-129 467.2 377 67.4
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 3.6e-128 462.2 372 69.9
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 3.0e-127 459.1 376 65.7
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 5.7e-126 454.9 385 65.5
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 3.2e-124 449.1 376 65.2
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 3.9e-122 442.2 377 63.1
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 7.3e-121 438.0 380 62.6
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 2.1e-120 436.4 377 63.4
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 8.9e-119 431.0 380 62.9
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 8.9e-119 431.0 379 63.9
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.2e-117 426.4 379 62.0
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.2e-117 426.4 380 62.4
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.2e-117 426.4 377 61.8
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 3.7e-117 425.6 378 62.2
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.0e-116 421.4 380 61.6
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.6e-115 418.7 376 58.5
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 7.8e-115 417.9 377 60.5
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.0e-114 417.5 378 59.8
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.3e-114 416.4 377 60.7
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 6.6e-114 414.8 306 73.9
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.1e-113 414.1 378 61.6
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 3.3e-113 412.5 377 59.4
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 9.5e-113 411.0 377 60.2
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.6e-112 410.2 377 60.2
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.6e-112 410.2 247 85.8
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 2.1e-112 409.8 376 58.8
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.8e-112 409.5 377 59.7
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 3.6e-112 409.1 377 59.2
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 8.1e-112 407.9 377 59.7
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 8.1e-112 407.9 377 58.9
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 7.5e-110 401.4 377 59.2
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.3e-109 400.6 377 59.2
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.3e-109 400.6 377 58.4
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 1.7e-109 400.2 377 59.7
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 3.7e-109 399.1 380 60.0
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 6.4e-109 398.3 372 59.7
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.4e-108 396.4 379 59.9
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 9.2e-108 394.4 377 57.0
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.2e-107 394.0 378 58.2
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 2.1e-107 393.3 376 59.6
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.7e-107 392.9 375 60.0
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 4.6e-107 392.1 379 58.8
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 1.5e-105 387.1 370 56.2
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 5.6e-105 385.2 377 60.2
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 7.3e-105 384.8 376 58.0
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 8.1e-104 381.3 376 57.4
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.1e-103 380.9 368 56.2
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.3e-103 379.8 374 56.7
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 2.6e-102 376.3 366 56.0
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 8.4e-101 371.3 342 57.9
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 2.4e-100 369.8 381 55.6
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 2.1e-99 366.7 382 55.2
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 3.5e-99 365.9 370 55.1
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 6.0e-99 365.2 380 53.9
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 7.8e-99 364.8 379 55.9
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 3.9e-98 362.5 379 54.9
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 5.1e-98 362.1 370 54.9
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 5.1e-98 362.1 393 55.5
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 1.5e-97 360.5 380 54.2
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 1.9e-97 360.1 382 53.9
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.5e-97 359.8 392 53.1
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 9.6e-97 357.8 381 54.1
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 2.8e-96 356.3 391 53.7
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 6.9e-95 351.7 381 52.5
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 9.0e-95 351.3 376 54.5
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.5e-94 350.5 381 52.8
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.0e-94 350.1 381 52.2
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.0e-94 350.1 381 52.2
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 4.4e-94 349.0 379 51.5
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 7.6e-94 348.2 381 51.4
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 2.2e-93 346.7 378 54.2
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 4.9e-93 345.5 381 52.5
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 1.4e-92 344.0 385 51.2
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 3.2e-92 342.8 391 50.6
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 9.3e-92 341.3 385 50.9
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 1.2e-91 340.9 385 50.6
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 2.1e-91 340.1 385 50.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 2.7e-91 339.7 377 53.8
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 6.0e-91 338.6 332 58.1
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 1.3e-90 337.4 405 49.1
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 1.1e-89 334.3 382 51.3
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.9e-85 319.7 385 47.3
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 3.8e-85 319.3 384 48.4
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 3.0e-82 309.7 281 59.4
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 3.3e-73 279.6 377 45.6
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 8.2e-64 248.4 225 65.3
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 5.3e-63 245.7 254 53.1
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.5e-62 244.2 384 40.1
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.9e-60 237.3 199 58.8
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 3.0e-58 229.9 389 39.8
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 2.8e-48 196.8 370 38.6
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 4.1e-47 193.0 166 60.8
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 4.1e-47 193.0 178 57.3
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 4.5e-46 189.5 170 64.1
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.9e-44 184.1 369 34.4
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.2e-43 181.4 234 47.9
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 2.1e-43 180.6 168 62.5
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.0e-41 174.1 168 60.7
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.4e-39 167.9 367 35.4
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 8.5e-37 158.7 158 53.2
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.5e-33 147.9 279 36.9
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 2.2e-29 134.0 155 47.7
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 2.7e-27 127.1 168 48.8
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.7e-27 126.3 160 47.5
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.0e-26 125.2 190 41.1
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-26 124.4 190 41.1
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 2.4e-23 114.0 142 48.6
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.6e-19 101.3 125 41.6
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.0e-18 98.6 92 50.0
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 8.9e-18 95.5 72 61.1
Psat0s1013g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.8e-15 87.8 66 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.5e-12 78.2 166 30.7
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 6.1e-11 72.8 436 24.8
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.1e-11 72.8 82 43.9
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.4e-10 71.6 81 48.1
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.0e-10 70.5 84 44.0
Gohir.D03G000201 Gossypium hirsutum HOM05D006028 ORTHO05D048139 2.7e-06 57.4 37 73.0
Gorai.003G000500 Gossypium raimondii HOM05D006028 ORTHO05D048139 2.7e-06 57.4 37 73.0


User provided reference genes

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