Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22740 Trifolium pratense HOM05D001068 ORTHO05D025923 2.1e-38 161.8 76 100.0
TPR.G37610 Trifolium pratense HOM05D001068 ORTHO05D003875 7.8e-33 143.3 74 93.2
Ca_21988_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 1.2e-30 136.0 74 87.8
Medtr4g100640 Medicago truncatula HOM05D001068 ORTHO05D003875 1.2e-30 136.0 74 87.8
Manes.02G041600 Manihot esculenta HOM05D001068 ORTHO05D003875 5.2e-29 130.6 74 83.8
vmacro00007 Vaccinium macrocarpon HOM05D001068 ORTHO05D003875 1.5e-28 129.0 74 82.4
Rhsim11G0003700 Rhododendron simsii HOM05D001068 ORTHO05D003875 2.6e-28 128.3 74 81.1
CSS0004981 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 7.5e-28 126.7 74 81.1
Nn6g33873 Nelumbo nucifera HOM05D001068 ORTHO05D003875 7.5e-28 126.7 74 83.8
CSS0023687 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 9.8e-28 126.3 74 82.4
Hma1.2p1_0316F.1_g122820 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 9.8e-28 126.3 74 82.4
Hma1.2p1_1136F.1_g260540 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 1.3e-27 125.9 74 82.4
Gohir.A09G196500 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.7e-27 125.6 75 77.3
Gorai.006G213900 Gossypium raimondii HOM05D001068 ORTHO05D003875 1.7e-27 125.6 75 77.3
CiPaw.12G050100 Carya illinoinensis HOM05D001068 ORTHO05D003875 2.2e-27 125.2 74 82.4
Lalb_Chr16g0386611 Lupinus albus HOM05D001068 ORTHO05D003875 2.2e-27 125.2 74 82.4
COL.COLO4_37120 Corchorus olitorius HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 79.7
FvH4_5g19470 Fragaria vesca HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 83.8
FAN04G2918 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 83.8
FAN08G3629 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 83.8
FAN13G2133 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 83.8
Glyma.01G207500 Glycine max HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 81.1
Glyma.11G035200 Glycine max HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 81.1
Manes.01G083700 Manihot esculenta HOM05D001068 ORTHO05D003875 2.9e-27 124.8 74 82.4
CiPaw.11G081900 Carya illinoinensis HOM05D001068 ORTHO05D003875 3.7e-27 124.4 74 82.4
Duzib068G1125 Durio zibethinus HOM05D001068 ORTHO05D003875 3.7e-27 124.4 74 78.4
Lalb_Chr09g0329981 Lupinus albus HOM05D001068 ORTHO05D003875 3.7e-27 124.4 74 79.7
Lj4g0020838 Lotus japonicus HOM05D001068 ORTHO05D003875 4.9e-27 124.0 74 78.4
Potri.003G079200 Populus trichocarpa HOM05D001068 ORTHO05D003875 4.9e-27 124.0 74 83.8
Sabra03G0049400 Salix brachista HOM05D001068 ORTHO05D003875 4.9e-27 124.0 74 82.4
VMungo0251G0971 Vigna mungo HOM05D001068 ORTHO05D003875 4.9e-27 124.0 74 81.1
Lj8A269T38 Lonicera japonica HOM05D001068 ORTHO05D003875 6.4e-27 123.6 74 79.7
FAN18G2254 Fragaria x ananassa HOM05D001068 ORTHO05D003875 8.3e-27 123.2 74 82.4
FAN18G3422 Fragaria x ananassa HOM05D001068 ORTHO05D003875 8.3e-27 123.2 74 82.4
FAN18G4353 Fragaria x ananassa HOM05D001068 ORTHO05D003875 8.3e-27 123.2 74 82.4
Glyma.05G062200 Glycine max HOM05D001068 ORTHO05D003875 8.3e-27 123.2 74 79.7
arahy.Tifrunner.gnm1.ann1.I9A8PV Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-26 122.9 74 78.4
arahy.Tifrunner.gnm1.ann1.ZPM9RR Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-26 122.9 74 78.4
Dinv39170 Davidia involucrata HOM05D001068 ORTHO05D003875 1.1e-26 122.9 74 78.4
Gohir.D09G191100 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.1e-26 122.9 75 76.0
RcHm_v2.0_Chr7g0204041 Rosa chinensis HOM05D001068 ORTHO05D003875 1.4e-26 122.5 74 82.4
Thecc.03G247900 Theobroma cacao HOM05D001068 ORTHO05D003875 1.4e-26 122.5 74 77.0
ClCG01G004240 Citrullus lanatus HOM05D001068 ORTHO05D003875 1.9e-26 122.1 74 83.8
Duzib205G0096 Durio zibethinus HOM05D001068 ORTHO05D003875 1.9e-26 122.1 74 78.4
Lj2g0000811 Lotus japonicus HOM05D001068 ORTHO05D003875 1.9e-26 122.1 74 79.7
Atru.chr9.1272 Acer truncatum HOM05D001068 ORTHO05D003875 4.1e-26 120.9 73 79.5
Dinv21659 Davidia involucrata HOM05D001068 ORTHO05D003875 4.1e-26 120.9 74 78.4
Phvul.003G222800 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 4.1e-26 120.9 74 78.4
TPR.G18124 Trifolium pratense HOM05D001068 ORTHO05D003875 4.1e-26 120.9 74 78.4
VMungo1215G1615 Vigna mungo HOM05D001068 ORTHO05D003875 5.4e-26 120.6 73 76.7
Haze_07942 Corylus avellana HOM05D001068 ORTHO05D003875 7.0e-26 120.2 74 77.0
Eucgr.E00406 Eucalyptus grandis HOM05D001068 ORTHO05D003875 7.0e-26 120.2 74 78.4
Gohir.A12G215400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 7.0e-26 120.2 74 74.3
Gohir.D12G218000 Gossypium hirsutum HOM05D001068 ORTHO05D003875 7.0e-26 120.2 74 74.3
Gorai.008G233600 Gossypium raimondii HOM05D001068 ORTHO05D003875 7.0e-26 120.2 74 74.3
TWI15G0242 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 7.0e-26 120.2 73 82.2
Cfa012691 Carpinus fangiana HOM05D001068 ORTHO05D003875 9.2e-26 119.8 74 77.0
Ca_24593_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 9.2e-26 119.8 74 79.7
Lalb_Chr05g0214351 Lupinus albus HOM05D001068 ORTHO05D003875 9.2e-26 119.8 74 79.7
Potri.001G155500 Populus trichocarpa HOM05D001068 ORTHO05D003875 9.2e-26 119.8 74 79.7
QL12p011360 Quercus lobata HOM05D001068 ORTHO05D003875 9.2e-26 119.8 74 79.7
AT4G16760 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 1.2e-25 119.4 74 78.4
CANSAT21G1427 Cannabis sativa HOM05D001068 ORTHO05D003875 1.2e-25 119.4 74 75.7
HanXRQChr08g0227741 Helianthus annuus HOM05D001068 ORTHO05D003875 1.2e-25 119.4 73 75.3
Phvul.002G056700 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 1.2e-25 119.4 73 75.3
TPR.G18139 Trifolium pratense HOM05D001068 ORTHO05D003875 1.2e-25 119.4 74 77.0
TAR629G1427 Trochodendron aralioides HOM05D001068 ORTHO05D003875 1.2e-25 119.4 74 77.0
Carub.0007s2462 Capsella rubella HOM05D001068 ORTHO05D003875 1.6e-25 119.0 74 79.7
CsaV3_5G004440 Cucumis sativus L. HOM05D001068 ORTHO05D003875 2.0e-25 118.6 74 79.7
Oeu040705.1 Olea europaea HOM05D001068 ORTHO05D003875 2.0e-25 118.6 74 75.7
MELO3C005515.2 Cucumis melo HOM05D001068 ORTHO05D003875 2.7e-25 118.2 74 79.7
Duzib084G1186 Durio zibethinus HOM05D001068 ORTHO05D003875 2.7e-25 118.2 74 75.7
PSO782G5462 Papaver somniferum HOM05D001068 ORTHO05D003875 2.7e-25 118.2 74 75.7
Zm00001eb376020 Zea mays HOM05D001068 ORTHO05D003875 2.7e-25 118.2 74 74.3
Sp7g17360 Schrenkiella parvula HOM05D001068 ORTHO05D003875 3.5e-25 117.9 74 79.7
Sed0012317 Sechium edule HOM05D001068 ORTHO05D003875 3.5e-25 117.9 74 81.1
Ciclev10019196m.g Citrus clementina HOM05D001068 ORTHO05D003875 4.6e-25 117.5 73 78.1
MD04G1060500 Malus domestica HOM05D001068 ORTHO05D003875 6.0e-25 117.1 74 77.0
Aa31LG2G12940 Aethionema arabicum HOM05D001068 ORTHO05D003875 7.8e-25 116.7 74 78.4
Thhalv10024621m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 7.8e-25 116.7 74 78.4
Medtr5g012920 Medicago truncatula HOM05D001068 ORTHO05D003875 1.0e-24 116.3 74 77.0
PGSC0003DMG400004828 Solanum tuberosum HOM05D001068 ORTHO05D003875 1.0e-24 116.3 74 75.7
BcaC09g50411 Brassica carinata HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 78.4
A01p20470 Brassica napus HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 78.4
C01p25740 Brassica napus HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 78.4
BolC1t02524H Brassica oleracea HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 78.4
BraA01t01975Z Brassica rapa HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 78.4
Gohir.A11G027400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 74.3
Gohir.D11G026600 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 74.3
Prupe.7G067100 Prunus persica HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 73.0
Sopen08g026880 Solanum pennellii HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 74.3
Zm00001eb379490 Zea mays HOM05D001068 ORTHO05D003875 1.3e-24 115.9 74 71.6
Lsat_1_v5_gn_6_18061 Lactuca sativa HOM05D001068 ORTHO05D003875 1.7e-24 115.5 73 75.3
Lalb_Chr05g0214331 Lupinus albus HOM05D001068 ORTHO05D003875 1.7e-24 115.5 74 75.7
PGR042G1327 Punica granatum HOM05D001068 ORTHO05D003875 1.7e-24 115.5 74 78.4
CDE02G3830 Ceratophyllum demersum HOM05D001068 ORTHO05D003875 2.3e-24 115.2 74 71.6
Prupe.5G065100 Prunus persica HOM05D001068 ORTHO05D003875 2.3e-24 115.2 74 77.0
CARHR223330 Cardamine hirsuta HOM05D001068 ORTHO05D003875 3.0e-24 114.8 74 77.0
Cpa.g.sc89.71 Carica papaya HOM05D001068 ORTHO05D003875 3.0e-24 114.8 74 78.4
Cc08_g12140 Coffea canephora HOM05D001068 ORTHO05D003875 3.0e-24 114.8 74 73.0
HanXRQChr16g0501091 Helianthus annuus HOM05D001068 ORTHO05D003875 3.0e-24 114.8 73 75.3
Sed0021431 Sechium edule HOM05D001068 ORTHO05D003875 3.0e-24 114.8 74 78.4
AL7G37930 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 3.9e-24 114.4 74 77.0
Gorai.007G028900 Gossypium raimondii HOM05D001068 ORTHO05D003875 3.9e-24 114.4 74 73.0
BcaNung00152 Brassica carinata HOM05D001068 ORTHO05D003875 5.0e-24 114.0 74 77.0
AUR62007112 Chenopodium quinoa HOM05D001068 ORTHO05D003875 5.0e-24 114.0 74 77.0
Hund14578 Selenicereus undatus HOM05D001068 ORTHO05D003875 5.0e-24 114.0 74 77.0
CAN.G1178.15 Capsicum annuum HOM05D001068 ORTHO05D003875 6.6e-24 113.6 74 74.3
ATR0057G009 Amborella trichopoda HOM05D001068 ORTHO05D003875 8.6e-24 113.2 74 73.0
Psat2g176520 Pisum sativum HOM05D001068 ORTHO05D003875 8.6e-24 113.2 74 77.0
EL10Ac5g12342 Beta vulgaris HOM05D001068 ORTHO05D003875 1.1e-23 112.8 74 74.3
Lalb_Chr05g0221141 Lupinus albus HOM05D001068 ORTHO05D003875 1.1e-23 112.8 74 77.0
Sc22g0001000 Simmondsia chinensis HOM05D001068 ORTHO05D003875 1.1e-23 112.8 74 73.0
Nitab4.5_0001381g0040 Nicotiana tabacum HOM05D001068 ORTHO05D003875 1.5e-23 112.5 74 73.0
SalBow6G3759 Salvia bowleyana HOM05D001068 ORTHO05D003875 1.5e-23 112.5 73 74.0
AL4G31770 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 1.9e-23 112.1 74 74.3
THA.LOC104814467 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.9e-23 112.1 74 73.0
Ah.12g054350 Amaranthus hybridus HOM05D001068 ORTHO05D003875 3.3e-23 111.3 74 73.0
AUR62019981 Chenopodium quinoa HOM05D001068 ORTHO05D003875 3.3e-23 111.3 74 74.3
Nitab4.5_0003050g0030 Nicotiana tabacum HOM05D001068 ORTHO05D003875 3.3e-23 111.3 74 73.0
MD13G1127300 Malus domestica HOM05D001068 ORTHO05D003875 4.3e-23 110.9 74 71.6
Sabra01G0125000 Salix brachista HOM05D001068 ORTHO05D003875 4.3e-23 110.9 74 75.7
Sabra01G0125200 Salix brachista HOM05D001068 ORTHO05D003875 4.3e-23 110.9 74 75.7
ECA233G2258 Erigeron canadensis HOM05D001068 ORTHO05D003875 5.6e-23 110.5 73 72.6
Hund28547 Selenicereus undatus HOM05D001068 ORTHO05D003875 5.6e-23 110.5 74 73.0
Hund28548 Selenicereus undatus HOM05D001068 ORTHO05D003875 5.6e-23 110.5 74 73.0
Thhalv10016360m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 7.3e-23 110.2 75 73.3
Migut.A01136 Erythranthe guttata HOM05D001068 ORTHO05D003875 9.5e-23 109.8 74 73.0
Os06g0103500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D003875 9.5e-23 109.8 74 70.3
TWI81G0453 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 9.5e-23 109.8 72 76.4
unitig_8.g3019 Utricularia gibba HOM05D001068 ORTHO05D003875 9.5e-23 109.8 74 67.6
THA.LOC104812770 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.2e-22 109.4 74 70.3
Ah.07g198830 Amaranthus hybridus HOM05D001068 ORTHO05D003875 1.6e-22 109.0 73 74.0
BcaC01g05713 Brassica carinata HOM05D001068 ORTHO05D003875 1.6e-22 109.0 75 70.7
A03p19670 Brassica napus HOM05D001068 ORTHO05D003875 1.6e-22 109.0 75 70.7
C03p22930 Brassica napus HOM05D001068 ORTHO05D003875 1.6e-22 109.0 75 70.7
BolC3t14694H Brassica oleracea HOM05D001068 ORTHO05D003875 1.6e-22 109.0 75 70.7
BraA03t11221Z Brassica rapa HOM05D001068 ORTHO05D003875 1.6e-22 109.0 75 70.7
Carub.0004s1742 Capsella rubella HOM05D001068 ORTHO05D003875 1.6e-22 109.0 74 71.6
RcHm_v2.0_Chr3g0481201 Rosa chinensis HOM05D001068 ORTHO05D003875 1.6e-22 109.0 74 70.3
CARHR129930 Cardamine hirsuta HOM05D001068 ORTHO05D003875 2.1e-22 108.6 74 71.6
Peaxi162Scf00214g00048 Petunia axillaris HOM05D001068 ORTHO05D003875 2.1e-22 108.6 74 70.3
SHI09349 Sapria himalayana HOM05D001068 ORTHO05D003875 2.1e-22 108.6 74 71.6
PGSC0003DMG400004827 Solanum tuberosum HOM05D001068 ORTHO05D003875 2.1e-22 108.6 74 68.9
THA.LOC104815504 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 2.8e-22 108.2 74 68.9
RcHm_v2.0_Chr3g0481221 Rosa chinensis HOM05D001068 ORTHO05D003875 3.6e-22 107.8 74 70.3
THA.LOC104806669 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 3.6e-22 107.8 75 66.7
AT2G35690 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 4.7e-22 107.5 74 71.6
MSTRG.12124 Avicennia marina HOM05D001068 ORTHO05D003875 6.2e-22 107.1 74 68.9
Sopen08g026890 Solanum pennellii HOM05D001068 ORTHO05D003875 6.2e-22 107.1 74 68.9
Aqoxy3G02817 Aquilegia oxysepala HOM05D001068 ORTHO05D003875 8.1e-22 106.7 74 70.3
DCAR_027764 Daucus carota HOM05D001068 ORTHO05D003875 1.8e-21 105.5 74 70.3
HPP92_022429 Vanilla planifolia HOM05D001068 ORTHO05D003875 1.8e-21 105.5 74 66.2
arahy.Tifrunner.gnm1.ann1.MWEA9C Arachis hypogaea HOM05D001068 ORTHO05D003875 2.3e-21 105.1 74 68.9
arahy.Tifrunner.gnm1.ann1.QXG3RX Arachis hypogaea HOM05D001068 ORTHO05D003875 2.3e-21 105.1 74 68.9
DCAR_008508 Daucus carota HOM05D001068 ORTHO05D003875 4.0e-21 104.4 73 68.5
Sp4g17950 Schrenkiella parvula HOM05D001068 ORTHO05D003875 4.0e-21 104.4 75 68.0
BcaB01g03886 Brassica carinata HOM05D001068 ORTHO05D003875 6.8e-21 103.6 75 68.0
ECA233G3500 Erigeron canadensis HOM05D001068 ORTHO05D003875 1.2e-20 102.8 73 68.5
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 5.8e-20 100.5 74 67.6
DCAR_004991 Daucus carota HOM05D001068 ORTHO05D003875 2.2e-19 98.6 74 66.2
SMO358G0542 Selaginella moellendorffii HOM05D001068 ORTHO05D003875 3.2e-18 94.7 74 62.2
TPR.G36072 Trifolium pratense HOM05D001068 ORTHO05D025923 2.1e-17 92.0 46 91.3
Mapoly0169s0009 Marchantia polymorpha HOM05D001068 ORTHO05D003875 3.0e-16 88.2 73 60.3
FAN02G0755 Fragaria x ananassa HOM05D001068 ORTHO05D003875 6.6e-16 87.0 59 67.8
TPR.G21239 Trifolium pratense HOM05D001068 ORTHO05D025923 8.6e-16 86.7 46 87.0
Pp3c14_14860 Physcomitrium patens HOM05D001068 ORTHO05D003875 1.2e-12 76.3 74 48.6
CSS0035524 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 2.0e-12 75.5 74 55.4
SEGI_12780 Sequoiadendron giganteum HOM05D001068 ORTHO05D025923 7.6e-12 73.6 55 61.8
Solyc08g078400.3 Solanum lycopersicum HOM05D001068 ORTHO05D003875 4.9e-11 70.9 47 70.2
SGA_v2.0_scaffold199G41219 Striga asiatica HOM05D001068 ORTHO05D003875 2.1e-09 65.5 46 67.4
CBR_g30062 Chara braunii HOM05D001068 ORTHO05D003875 1.9e-07 58.9 73 41.1


User provided reference genes

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