Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.3e-55 219.5 112 100.0
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 5.9e-37 157.5 89 92.1
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 3.0e-33 145.2 89 83.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.9e-33 144.8 89 84.3
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.6e-32 142.1 105 76.2
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.3e-28 129.8 92 75.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 3.8e-28 128.3 92 75.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 4.2e-27 124.8 92 73.9
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.4e-25 119.8 89 71.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.3e-25 119.0 92 71.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 8.5e-20 100.5 90 62.2
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 4.2e-19 98.2 64 78.1
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 5.5e-19 97.8 80 66.2
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 2.1e-18 95.9 92 57.6
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 8.0e-18 94.0 92 56.5
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.8e-17 92.8 92 55.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 2.3e-17 92.4 92 54.3
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.3e-17 92.4 89 58.4
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.0e-17 92.0 89 59.6
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.0e-17 91.7 89 58.4
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 4.0e-17 91.7 89 56.2
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.7e-16 87.8 91 56.0
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 7.5e-16 87.4 59 76.3
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 7.5e-16 87.4 93 57.0
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.3e-15 86.7 92 54.3
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.2e-15 85.9 92 52.2
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.8e-15 85.5 92 54.3
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.8e-15 84.7 92 52.2
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 4.8e-15 84.7 97 52.6
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.8e-14 82.8 89 51.7
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.8e-14 82.8 89 53.9
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.1e-14 82.0 92 50.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.3e-14 81.3 92 51.1
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.3e-14 81.3 92 51.1
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 5.3e-14 81.3 92 50.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 7.0e-14 80.9 92 51.1
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 9.1e-14 80.5 89 51.7
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.2e-13 80.1 89 52.8
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.6e-13 79.7 89 50.6
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.7e-13 79.0 89 50.6
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.7e-13 79.0 92 50.0
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.7e-13 79.0 89 50.6
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 3.5e-13 78.6 92 50.0
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 4.5e-13 78.2 89 49.4
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 4.5e-13 78.2 89 49.4
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 4.5e-13 78.2 89 49.4
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.7e-13 77.4 89 51.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.7e-13 77.4 89 51.7
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.3e-12 76.6 92 53.3
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.3e-12 76.6 89 52.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.3e-12 76.6 89 52.8
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.7e-12 76.3 89 46.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.7e-12 76.3 92 47.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.7e-12 76.3 91 49.5
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.7e-12 76.3 91 49.5
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.7e-12 76.3 89 50.6
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-12 75.9 89 47.2
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.8e-12 75.1 92 50.0
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 5.0e-12 74.7 90 51.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 5.0e-12 74.7 79 51.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.5e-12 73.9 91 49.5
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.1e-11 73.6 95 50.5
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.5e-11 73.2 94 51.1
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.5e-11 73.2 62 64.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.9e-11 72.8 89 50.6
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.9e-11 72.8 98 49.0
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.5e-11 72.4 71 53.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.5e-11 72.4 57 66.7
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.5e-11 72.4 94 51.1
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.5e-11 72.4 92 47.8
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.2e-11 71.6 92 45.7
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.5e-11 71.2 93 49.5
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 9.4e-11 70.5 61 59.0
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 9.4e-11 70.5 92 48.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.2e-10 70.1 89 52.8
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.6e-10 69.7 89 50.6
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 1.6e-10 69.7 90 45.6
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.1e-10 69.3 89 46.1
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 2.1e-10 69.3 89 47.2
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.6e-10 68.6 89 51.7
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.6e-10 68.6 89 46.1
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 3.6e-10 68.6 89 47.2
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 6.1e-10 67.8 92 44.6
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.0e-10 67.4 59 59.3
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.0e-09 67.0 89 44.9
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.0e-09 67.0 98 44.9
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.0e-09 67.0 98 44.9
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.0e-09 67.0 47 70.2
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.4e-09 66.6 92 47.8
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.3e-09 65.9 58 58.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.0e-09 65.1 92 45.7
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.2e-09 64.7 65 56.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 6.8e-09 64.3 50 68.0
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.2e-08 63.5 89 44.9
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.5e-08 63.2 76 48.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.5e-08 63.2 89 46.1
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.0e-08 62.8 89 47.2
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.0e-08 62.8 67 56.7
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.6e-08 62.4 92 42.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.6e-08 62.4 59 57.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 4.4e-08 61.6 94 45.7
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.3e-07 60.1 50 62.0
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.2e-07 59.3 89 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.7e-07 58.5 86 44.2
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-07 58.2 50 58.0


User provided reference genes

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