Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.0e-130 468.0 220 100.0
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 4.7e-107 391.3 212 87.3
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.4e-97 358.6 208 79.3
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 9.9e-97 357.1 207 78.7
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.2e-96 355.9 207 80.2
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.2e-94 350.1 203 77.3
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.6e-94 349.7 204 81.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 4.6e-94 348.2 205 75.6
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.3e-92 342.0 198 78.8
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 3.3e-92 342.0 200 77.0
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 4.3e-92 341.7 217 71.9
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.3e-91 340.1 192 78.1
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.8e-91 339.0 200 77.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 4.8e-91 338.2 198 77.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 1.1e-90 337.0 198 76.8
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.1e-90 337.0 200 77.0
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.1e-90 337.0 198 76.8
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.4e-90 336.7 204 74.5
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.4e-90 335.9 200 77.0
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.1e-90 335.5 192 77.6
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 3.1e-90 335.5 192 78.6
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.1e-90 335.5 198 76.8
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 3.1e-90 335.5 198 75.3
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 4.0e-90 335.1 192 77.6
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 4.0e-90 335.1 199 74.4
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 5.3e-90 334.7 192 77.6
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 6.9e-90 334.3 198 76.8
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-89 333.6 204 75.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.2e-89 333.6 224 69.2
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.5e-89 333.2 192 76.6
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 2.0e-89 332.8 192 79.2
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.6e-89 332.4 199 75.9
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 3.4e-89 332.0 206 77.7
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 3.4e-89 332.0 198 76.3
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 4.5e-89 331.6 200 75.0
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 7.6e-89 330.9 198 74.2
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.3e-88 330.1 198 75.8
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 2.2e-88 329.3 198 75.8
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.9e-88 328.9 198 75.3
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.8e-88 328.6 200 76.5
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.9e-87 326.2 201 72.6
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.9e-87 326.2 191 75.9
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.9e-87 326.2 198 74.7
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 5.5e-87 324.7 216 69.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 9.3e-87 323.9 199 73.4
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.2e-86 323.6 192 74.5
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.6e-86 323.2 206 72.8
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.5e-86 322.0 206 72.8
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 4.6e-86 321.6 193 76.2
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.6e-86 321.6 201 73.6
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 7.9e-86 320.9 199 72.9
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.3e-85 320.1 192 73.4
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.8e-85 319.7 199 72.4
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.3e-85 319.3 193 75.6
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.0e-85 318.9 193 75.1
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 3.9e-85 318.5 192 74.0
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.7e-85 317.8 193 75.1
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.5e-84 316.6 200 71.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.9e-84 316.2 203 72.4
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.5e-84 315.8 190 76.8
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 7.4e-84 314.3 188 75.0
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.7e-83 312.0 203 69.5
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.8e-83 311.6 193 74.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 8.1e-83 310.8 200 68.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.1e-82 310.5 194 70.6
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.4e-82 309.3 199 68.3
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 6.9e-82 307.8 193 71.0
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.0e-80 303.9 199 69.3
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.7e-80 303.1 193 69.4
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.5e-80 301.2 192 70.3
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 6.5e-80 301.2 193 71.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.9e-79 299.7 172 79.7
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 7.1e-79 297.7 193 71.0
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 9.3e-79 297.4 193 70.5
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.6e-78 296.6 193 70.5
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.6e-78 296.6 193 70.5
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.6e-78 296.6 193 70.5
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.1e-78 296.2 193 71.5
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.7e-78 295.8 193 72.0
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 3.5e-78 295.4 193 69.9
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 3.0e-77 292.4 189 69.3
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.1e-76 290.4 172 74.4
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.3e-75 287.0 193 69.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 8.2e-75 284.3 171 74.3
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 9.0e-74 280.8 171 73.1
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 4.5e-73 278.5 193 66.8
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.3e-72 276.9 190 66.8
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 2.9e-72 275.8 192 66.7
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.9e-72 275.8 196 65.3
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 6.5e-72 274.6 195 67.2
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 3.2e-71 272.3 190 66.3
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 6.1e-70 268.1 171 70.8
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 7.9e-70 267.7 171 73.7
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 8.7e-69 264.2 189 60.3
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.5e-68 263.5 171 69.0
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 5.7e-68 261.5 173 70.5
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 9.7e-68 260.8 199 59.3
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.4e-66 256.1 206 58.7
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.7e-64 250.0 192 64.1
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-62 243.8 213 58.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.2e-62 243.8 189 57.7
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 3.0e-61 239.2 195 61.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 9.1e-58 227.6 165 63.0
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-55 220.3 195 57.9
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 7.2e-55 218.0 201 56.7
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.7e-54 216.1 195 55.9
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.9e-53 212.2 160 62.5
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.7e-51 206.8 197 53.3
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.6e-49 200.3 194 50.0
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.2e-48 196.4 152 63.2
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 6.1e-46 188.3 192 51.0
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.6e-41 173.7 195 43.1
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.9e-41 171.8 149 53.7
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.5e-39 166.4 169 53.3
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.0e-37 161.0 80 91.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.8e-34 150.2 422 28.7
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.2e-33 147.5 191 38.7
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.7e-33 146.4 442 26.7
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.7e-33 146.4 442 26.7
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.6e-28 129.8 145 46.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 7.8e-25 118.2 81 64.2
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 2.3e-16 90.1 84 51.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 3.9e-16 89.4 58 69.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 5.8e-12 75.5 51 60.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.7e-11 73.9 51 60.8
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 3.7e-11 72.8 42 69.0
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.9e-11 72.4 107 43.0
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.7e-08 63.9 220 27.3
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 1.7e-08 63.9 43 58.1
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 9.5e-07 58.2 46 54.3


User provided reference genes

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