Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 3.0e-93 345.5 218 100.0
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.5e-54 215.7 258 60.1
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.9e-39 166.8 160 75.6
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 2.3e-37 159.8 244 47.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 7.4e-36 154.8 254 50.8
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.1e-34 151.0 228 62.7
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 4.2e-31 139.0 253 43.1
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 5.1e-29 132.1 231 55.4
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 7.4e-28 128.3 216 53.2
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.4e-26 124.0 226 51.3
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 6.9e-26 121.7 289 38.4
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 9.1e-26 121.3 208 40.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 5.9e-25 118.6 210 43.8
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.3e-24 117.5 226 46.9
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 3.8e-24 115.9 220 55.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 4.7e-22 109.0 216 39.4
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 6.1e-22 108.6 80 72.5
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 6.1e-22 108.6 80 72.5
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.0e-21 106.3 78 69.2
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.0e-21 106.3 227 50.2
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 5.2e-21 105.5 223 38.1
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 6.7e-21 105.1 78 69.2
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 6.7e-21 105.1 78 69.2
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 8.8e-21 104.8 207 39.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 5.7e-20 102.1 80 65.0
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 7.4e-20 101.7 76 72.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.7e-19 99.4 226 37.2
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.7e-19 99.4 80 63.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.3e-19 98.6 83 63.9
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 8.2e-19 98.2 228 39.9
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.1e-18 97.8 188 38.3
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.4e-18 96.7 76 65.8
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.4e-18 96.7 71 69.0
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.1e-18 95.9 74 70.3
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 7.0e-18 95.1 81 64.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 7.0e-18 95.1 228 35.1
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 7.0e-18 95.1 72 69.4
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 7.0e-18 95.1 79 64.6
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.1e-18 94.7 287 40.8
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.1e-18 94.7 287 40.8
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.2e-17 94.4 82 62.2
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.2e-17 94.4 82 62.2
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-17 94.4 224 36.2
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-17 93.6 72 66.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.6e-17 93.2 72 66.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.6e-17 93.2 80 62.5
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.6e-17 93.2 80 63.8
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.6e-17 93.2 78 60.3
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 4.5e-17 92.4 72 68.1
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 7.7e-17 91.7 80 57.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.3e-16 90.9 70 65.7
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.3e-16 90.9 72 65.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.3e-16 90.9 70 65.7
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.7e-16 90.5 69 68.1
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 2.2e-16 90.1 79 65.8
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.2e-16 90.1 72 68.1
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 2.2e-16 90.1 72 68.1
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.9e-16 89.7 82 59.8
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.5e-16 88.6 79 55.7
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 6.5e-16 88.6 79 57.0
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 6.5e-16 88.6 203 51.2
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 8.5e-16 88.2 198 49.0
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 8.5e-16 88.2 77 64.9
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.5e-15 87.4 75 60.0
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.5e-15 87.4 78 56.4
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.5e-15 87.4 74 62.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.5e-15 86.7 79 55.7
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.5e-15 86.7 224 37.5
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 7.2e-15 85.1 74 62.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 7.2e-15 85.1 76 59.2
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 7.2e-15 85.1 76 59.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 9.4e-15 84.7 79 62.0
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.6e-14 84.0 226 36.7
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.1e-14 83.6 80 57.5
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 2.1e-14 83.6 80 57.5
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.7e-14 83.2 106 50.0
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.7e-14 83.2 85 55.3
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 3.6e-14 82.8 105 50.5
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 6.1e-14 82.0 70 60.0
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 6.1e-14 82.0 72 62.5
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.0e-13 81.3 76 56.6
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.4e-13 80.9 82 57.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.4e-13 80.9 73 61.6
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.8e-13 80.5 99 49.5
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.3e-13 80.1 218 34.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 4.0e-13 79.3 218 42.2
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 6.7e-13 78.6 101 45.5
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.2e-12 77.8 70 64.3
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 1.2e-12 77.8 48 87.5
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.0e-12 77.0 70 64.3
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.3e-12 76.3 62 66.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 3.3e-12 76.3 70 52.9
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.3e-12 76.3 205 42.0
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 4.4e-12 75.9 70 62.9
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.4e-12 75.9 70 62.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.8e-11 73.2 69 62.3
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.2e-11 71.6 69 60.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 7.0e-10 68.6 84 51.2
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 9.1e-10 68.2 56 58.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 2.7e-09 66.6 69 50.7
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 4.5e-09 65.9 41 73.2
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 4.5e-09 65.9 69 50.7
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.3e-08 64.3 57 54.4
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.7e-08 63.9 68 51.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.7e-08 63.9 71 49.3
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.9e-08 63.2 96 44.8
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 8.5e-08 61.6 82 43.9
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 2.5e-07 60.1 224 34.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 3.2e-07 59.7 70 47.1
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 7.2e-07 58.5 65 53.8


User provided reference genes

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