Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 0.0e+00 3175.6 1809 100.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 0.0e+00 2195.2 1623 74.6
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 0.0e+00 2144.8 1715 71.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 0.0e+00 1949.5 1671 67.6
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1719.9 1653 61.6
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1709.9 1653 61.7
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 0.0e+00 1701.0 1639 62.5
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 0.0e+00 1659.4 1688 59.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 0.0e+00 1545.0 1650 58.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1502.6 1661 56.5
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 0.0e+00 1305.8 1422 57.2
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 3.7e-311 1072.4 1704 44.3
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 4.7e-293 1012.3 1703 42.8
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 4.4e-283 979.2 1711 42.0
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 6.3e-282 975.3 1695 42.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 6.1e-277 958.7 1703 41.5
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 6.1e-277 958.7 1703 41.5
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.2e-274 950.3 920 59.9
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.2e-269 934.5 1707 41.4
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 3.6e-269 932.9 1708 40.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 4.9e-258 896.0 1759 39.9
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 1.1e-254 884.8 1687 38.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 3.3e-254 883.2 1758 38.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 1.3e-250 871.3 1680 40.3
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 4.1e-249 866.3 1677 40.0
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.9e-247 859.8 1705 39.1
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 1.9e-246 857.4 1731 38.2
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.1e-245 852.0 1737 39.1
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.6e-243 847.0 1736 38.8
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 7.6e-243 845.5 1672 38.0
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 4.1e-241 839.7 1632 39.3
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 4.6e-240 836.3 1744 38.7
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 5.1e-239 832.8 1815 37.0
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 6.6e-239 832.4 1776 37.3
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.2e-237 828.2 1717 37.7
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.9e-233 814.3 1668 38.3
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-231 807.7 1666 37.1
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.6e-224 784.6 1620 38.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 3.6e-221 773.5 1760 36.2
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.0e-219 767.7 1802 35.2
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.6e-219 767.3 1815 35.0
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.2e-217 760.4 1673 36.9
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 4.6e-216 756.5 1814 35.5
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.1e-213 747.7 1647 36.2
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.6e-211 740.7 1784 35.8
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.4e-209 734.9 1759 34.6
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 3.2e-209 733.8 1284 42.4
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.7e-208 730.7 1788 35.7
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 3.5e-208 730.3 1846 35.4
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.3e-207 727.6 1766 34.1
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.3e-207 727.6 1718 35.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 3.9e-207 726.9 1654 36.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 6.9e-204 716.1 1693 36.3
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 9.0e-204 715.7 1729 35.3
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.9e-201 708.0 1757 34.5
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-201 708.0 1699 34.7
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 8.7e-199 699.1 1781 34.9
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 7.4e-198 696.0 1747 35.1
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 8.2e-197 692.6 1718 35.3
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 4.1e-196 690.3 1686 34.6
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.6e-195 687.6 1789 33.4
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.5e-194 682.9 1626 34.9
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.1e-192 676.4 2094 31.3
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 3.3e-190 670.6 1134 40.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.8e-188 664.8 1646 34.3
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 6.5e-186 656.4 1680 34.8
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.4e-185 655.2 1645 35.2
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 9.4e-185 652.5 1751 33.8
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.3e-183 647.9 1666 34.7
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 5.7e-182 643.3 1644 33.7
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.3e-181 642.1 1591 34.9
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.2e-179 635.6 1671 34.0
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.9e-177 628.2 1685 33.1
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.2e-177 626.3 1506 35.9
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 7.5e-174 616.3 1603 33.7
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 4.8e-173 613.6 1596 33.7
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.5e-170 603.2 1740 34.4
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 4.2e-169 600.5 1650 33.1
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 2.6e-158 564.7 1602 32.8
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 2.3e-154 551.6 1736 30.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.2e-152 545.8 1661 31.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.3e-133 482.6 1602 31.5
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-128 465.3 761 40.9
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 3.6e-120 438.0 1443 31.9
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.4e-108 397.5 995 36.9
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.1e-107 395.6 1332 31.0
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.1e-107 395.6 1332 31.0
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 6.7e-106 390.6 906 33.8
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.6e-102 378.6 799 35.7
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.1e-100 373.2 442 45.9
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 4.6e-99 367.9 858 36.2
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-97 362.5 845 36.3
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 5.5e-84 317.8 445 42.2
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.3e-82 312.4 903 36.1
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 4.8e-80 304.7 1034 28.7
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 8.2e-80 303.9 241 66.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.4e-78 298.5 916 36.1
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 6.5e-69 267.7 819 35.5
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.7e-64 251.9 470 35.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 5.3e-63 248.1 1659 23.9
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 6.5e-61 241.1 1625 25.1
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.5e-60 239.2 1040 25.7
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.1e-59 236.1 889 30.9
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.6e-59 235.3 647 30.9
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 7.5e-57 227.6 608 31.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.0e-54 219.5 276 47.5
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.7e-54 217.6 290 47.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 6.1e-51 208.0 477 39.8
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.3e-48 200.3 236 47.9
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.8e-48 199.1 167 62.9
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.8e-47 196.4 236 44.5
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.8e-45 188.7 194 53.1
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 5.5e-44 184.9 182 52.2
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-42 180.3 804 30.2
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.8e-39 169.9 234 46.2
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.0e-38 166.4 195 47.7
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.5e-36 157.5 150 50.0
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 3.2e-31 142.5 643 30.6
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 7.0e-31 141.4 645 30.1
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.6e-29 134.8 505 30.5
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 3.3e-28 132.5 276 38.0
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.1e-26 127.5 181 42.0
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.3e-26 126.3 91 61.5
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.3e-26 126.3 127 54.3
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 6.4e-24 118.2 930 26.3
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 4.6e-22 112.1 419 26.3
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 7.8e-22 111.3 127 48.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 7.8e-22 111.3 133 45.1
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 7.3e-20 104.8 93 59.1
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.2e-19 104.0 630 29.0
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.1e-18 100.9 319 29.5
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.8e-18 98.2 223 33.2
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.4e-17 95.5 79 57.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.9e-16 92.8 107 43.9
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-14 86.7 63 61.9
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.6e-14 85.5 68 58.8
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.0e-13 84.3 761 26.1
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 3.3e-12 79.3 115 47.8
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.3e-12 79.3 57 63.2
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.3e-12 79.3 128 36.7
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 6.2e-11 75.1 108 35.2
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-07 63.5 92 39.1
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 1.2e-06 60.8 65 44.6
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.7e-06 59.7 60 45.0
Psat5g199000 Pisum sativum HOM05D001046 ORTHO05D005117 6.0e-06 58.5 35 77.1
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 7.8e-06 58.2 402 26.6


User provided reference genes

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