Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22071 Trifolium pratense HOM05D000070 ORTHO05D050751 1.1e-34 149.4 75 100.0
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 1.1e-31 139.4 75 94.7
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 1.4e-29 132.5 75 89.3
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 5.7e-28 127.1 77 87.0
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 5.5e-23 110.5 75 78.7
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 6.1e-22 107.1 75 76.0
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 1.8e-21 105.5 75 74.7
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 2.3e-21 105.1 75 76.0
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 3.9e-21 104.4 75 74.7
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 8.8e-21 103.2 75 74.7
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 4.1e-18 94.4 75 70.7
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 4.1e-18 94.4 75 70.7
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 7.2e-15 83.6 76 61.8
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 9.4e-15 83.2 71 66.2
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 9.4e-15 83.2 71 66.2
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 1.2e-14 82.8 76 60.5
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 8.0e-14 80.1 76 60.5
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 8.0e-14 80.1 76 60.5
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 8.0e-14 80.1 76 61.8
vmacro00627 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 8.0e-14 80.1 65 64.6
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 1.0e-13 79.7 76 61.8
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 1.4e-13 79.3 71 63.4
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 2.3e-13 78.6 71 63.4
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 2.3e-13 78.6 76 57.9
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 2.3e-13 78.6 76 60.5
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 3.0e-13 78.2 71 62.0
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 4.0e-13 77.8 77 54.5
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 5.2e-13 77.4 71 63.4
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 5.2e-13 77.4 71 60.6
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 5.2e-13 77.4 71 62.0
Eucgr.A00078 Eucalyptus grandis HOM05D000070 ORTHO05D005931 6.8e-13 77.0 75 58.7
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 1.2e-12 76.3 76 57.9
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 2.6e-12 75.1 74 56.8
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 4.4e-12 74.3 74 56.8
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 4.4e-12 74.3 74 56.8
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 5.7e-12 73.9 67 61.2
MSTRG.1524 Avicennia marina HOM05D000070 ORTHO05D005931 9.7e-12 73.2 77 57.1
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.3e-11 72.8 76 57.9
Sabra17G0019800 Salix brachista HOM05D000070 ORTHO05D050751 1.3e-11 72.8 76 57.9
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 1.3e-11 72.8 76 57.9
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 1.7e-11 72.4 63 61.9
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.7e-11 72.4 76 57.9
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 1.7e-11 72.4 76 57.9
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 2.8e-11 71.6 74 56.8
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 3.7e-11 71.2 68 58.8
Thhalv10006586m.g Eutrema salsugineum HOM05D000070 ORTHO05D005931 4.8e-11 70.9 74 56.8
Nn1g09696 Nelumbo nucifera HOM05D000070 ORTHO05D005931 6.3e-11 70.5 76 56.6
Aa31LG1G8340 Aethionema arabicum HOM05D000070 ORTHO05D005931 8.3e-11 70.1 74 55.4
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 1.8e-10 68.9 76 55.3
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 1.8e-10 68.9 75 58.7
AT1G05910 Arabidopsis thaliana HOM05D000070 ORTHO05D005931 3.1e-10 68.2 75 57.3
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 3.1e-10 68.2 71 57.7
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 3.1e-10 68.2 71 57.7
Atru.chr3.1506 Acer truncatum HOM05D000070 ORTHO05D005931 4.1e-10 67.8 76 56.6
Carub.0001s0528 Capsella rubella HOM05D000070 ORTHO05D005931 4.1e-10 67.8 74 55.4
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 5.3e-10 67.4 74 54.1
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 5.3e-10 67.4 62 59.7
BcaC07g42100 Brassica carinata HOM05D000070 ORTHO05D005931 7.0e-10 67.0 75 56.0
C08p51530 Brassica napus HOM05D000070 ORTHO05D005931 7.0e-10 67.0 75 56.0
BolC8t52681H Brassica oleracea HOM05D000070 ORTHO05D005931 7.0e-10 67.0 75 56.0
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 9.1e-10 66.6 74 54.1
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 1.2e-09 66.2 74 55.4
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 1.2e-09 66.2 74 55.4
A09p67240 Brassica napus HOM05D000070 ORTHO05D005931 1.6e-09 65.9 75 56.0
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 2.7e-09 65.1 71 54.9
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 4.5e-09 64.3 78 53.8
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 7.7e-09 63.5 75 54.7
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 7.7e-09 63.5 68 54.4
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 1.0e-08 63.2 76 55.3
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 1.7e-08 62.4 71 54.9
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 1.7e-08 62.4 71 54.9
THA.LOC104826206 Tarenaya hassleriana HOM05D000070 ORTHO05D005931 2.2e-08 62.0 67 53.7
PSO210G2057 Papaver somniferum HOM05D000070 ORTHO05D005931 6.5e-08 60.5 66 56.1
PSO832G4402 Papaver somniferum HOM05D000070 ORTHO05D005931 6.5e-08 60.5 66 56.1
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 1.5e-07 59.3 55 61.8
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 1.9e-07 58.9 61 57.4
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 1.9e-07 58.9 48 66.7
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 2.5e-07 58.5 53 62.3
Prupe.1G191800 Prunus persica HOM05D000070 ORTHO05D005931 6.1e-06 53.9 73 50.7


User provided reference genes

Program Settings