Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22023 Trifolium pratense HOM05D006533 ORTHO05D008625 7.8e-115 417.2 213 100.0
Medtr5g007700 Medicago truncatula HOM05D006533 ORTHO05D008625 1.1e-105 386.7 213 91.5
Psat2g188880 Pisum sativum HOM05D006533 ORTHO05D008625 9.0e-103 377.1 213 89.2
Ca_24442_v3 Cicer arietinum L. HOM05D006533 ORTHO05D008625 1.1e-100 370.2 213 87.8
Lj6g0021866 Lotus japonicus HOM05D006533 ORTHO05D008625 1.9e-100 369.4 213 88.3
LjContig00222g0024674 Lotus japonicus HOM05D006533 ORTHO05D008625 1.9e-100 369.4 213 88.3
Phvul.002G039600 Phaseolus vulgaris HOM05D006533 ORTHO05D008625 2.3e-98 362.5 213 85.4
Glyma.01G228300 Glycine max HOM05D006533 ORTHO05D008625 3.0e-98 362.1 213 87.3
Glyma.11G011100 Glycine max HOM05D006533 ORTHO05D008625 8.7e-98 360.5 213 86.9
VMungo1215G1087 Vigna mungo HOM05D006533 ORTHO05D008625 2.5e-97 359.0 213 84.5
arahy.Tifrunner.gnm1.ann1.NII7HE Arachis hypogaea HOM05D006533 ORTHO05D008625 3.6e-96 355.1 209 83.7
arahy.Tifrunner.gnm1.ann1.YJZS8S Arachis hypogaea HOM05D006533 ORTHO05D008625 1.4e-95 353.2 209 83.7
Lalb_Chr09g0320221 Lupinus albus HOM05D006533 ORTHO05D008625 1.8e-95 352.8 214 84.6
FvH4_7g33920 Fragaria vesca HOM05D006533 ORTHO05D008625 4.6e-91 338.2 212 76.9
RcHm_v2.0_Chr1g0384131 Rosa chinensis HOM05D006533 ORTHO05D008625 7.9e-91 337.4 212 77.4
FAN03G0602 Fragaria x ananassa HOM05D006533 ORTHO05D008625 1.0e-90 337.0 212 76.9
FAN10G3989 Fragaria x ananassa HOM05D006533 ORTHO05D008625 3.0e-90 335.5 212 75.9
Medtr5g061700 Medicago truncatula HOM05D006533 ORTHO05D008625 1.5e-89 333.2 211 82.5
QL09p024067 Quercus lobata HOM05D006533 ORTHO05D008625 5.6e-89 331.3 213 78.4
CANSAT56G1022 Cannabis sativa HOM05D006533 ORTHO05D008625 3.7e-88 328.6 205 80.0
CANSAT56G3916 Cannabis sativa HOM05D006533 ORTHO05D008625 1.1e-87 327.0 205 79.5
Prupe.2G325700 Prunus persica HOM05D006533 ORTHO05D008625 3.1e-87 325.5 213 77.5
AUR62002060 Chenopodium quinoa HOM05D006533 ORTHO05D008625 2.6e-86 322.4 217 76.5
CiPaw.06G033000 Carya illinoinensis HOM05D006533 ORTHO05D008625 3.4e-86 322.0 204 78.9
AUR62028174 Chenopodium quinoa HOM05D006533 ORTHO05D008625 7.6e-86 320.9 217 76.5
MD07G1308500 Malus domestica HOM05D006533 ORTHO05D008625 1.7e-85 319.7 213 76.5
Actinidia34305 Actinidia chinensis HOM05D006533 ORTHO05D008625 3.2e-84 315.5 202 79.7
GSVIVG01024411001 Vitis vinifera HOM05D006533 ORTHO05D008625 9.3e-84 313.9 219 73.1
Eucgr.K00088 Eucalyptus grandis HOM05D006533 ORTHO05D008625 1.6e-83 313.2 206 75.7
Thecc.01G135900 Theobroma cacao HOM05D006533 ORTHO05D008625 2.7e-83 312.4 213 75.6
Sabra13G0070900 Salix brachista HOM05D006533 ORTHO05D008625 1.0e-82 310.5 219 74.0
Cc02_g00290 Coffea canephora HOM05D006533 ORTHO05D008625 1.3e-82 310.1 216 75.0
Gohir.A09G004900 Gossypium hirsutum HOM05D006533 ORTHO05D008625 2.3e-82 309.3 213 74.6
Gohir.D09G004200 Gossypium hirsutum HOM05D006533 ORTHO05D008625 2.3e-82 309.3 213 74.6
Gorai.006G005800 Gossypium raimondii HOM05D006533 ORTHO05D008625 2.3e-82 309.3 213 74.6
CAN.G473.117 Capsicum annuum HOM05D006533 ORTHO05D008625 3.0e-82 308.9 204 76.5
ClCG05G007010 Citrullus lanatus HOM05D006533 ORTHO05D008625 3.0e-82 308.9 203 73.9
Oeu060384.1 Olea europaea HOM05D006533 ORTHO05D008625 3.0e-82 308.9 210 74.8
Potri.013G082000 Populus trichocarpa HOM05D006533 ORTHO05D008625 5.1e-82 308.1 219 74.4
SGA_v2.0_scaffold18G08508 Striga asiatica HOM05D006533 ORTHO05D008625 2.5e-81 305.8 210 74.3
Sopen02g038900 Solanum pennellii HOM05D006533 ORTHO05D008625 4.3e-81 305.1 205 74.6
CsaV3_3G015700 Cucumis sativus L. HOM05D006533 ORTHO05D008625 5.7e-81 304.7 203 72.9
THA.LOC104820882 Tarenaya hassleriana HOM05D006533 ORTHO05D008625 5.7e-81 304.7 207 73.4
Cpa.g.sc39.72 Carica papaya HOM05D006533 ORTHO05D008625 7.4e-81 304.3 203 76.8
Migut.F00098 Erythranthe guttata HOM05D006533 ORTHO05D008625 7.4e-81 304.3 210 73.3
Sed0002742 Sechium edule HOM05D006533 ORTHO05D008625 9.6e-81 303.9 203 72.4
Solyc02g094260.1 Solanum lycopersicum HOM05D006533 ORTHO05D008625 9.6e-81 303.9 205 74.1
Atru.chr1.2781 Acer truncatum HOM05D006533 ORTHO05D008625 1.3e-80 303.5 207 76.3
MSTRG.8576 Avicennia marina HOM05D006533 ORTHO05D008625 1.6e-80 303.1 212 72.2
PGSC0003DMG400020249 Solanum tuberosum HOM05D006533 ORTHO05D008625 2.1e-80 302.8 205 74.6
Ah.04g156530 Amaranthus hybridus HOM05D006533 ORTHO05D008625 2.8e-80 302.4 207 73.9
DCAR_009009 Daucus carota HOM05D006533 ORTHO05D008625 3.7e-80 302.0 212 73.6
ECA232G2080 Erigeron canadensis HOM05D006533 ORTHO05D008625 4.1e-79 298.5 207 73.9
PGR142G1840 Punica granatum HOM05D006533 ORTHO05D008625 4.1e-79 298.5 219 69.4
CARHR196200 Cardamine hirsuta HOM05D006533 ORTHO05D008625 2.0e-78 296.2 205 70.2
AL6G27960 Arabidopsis lyrata HOM05D006533 ORTHO05D008625 4.5e-78 295.0 205 69.8
Aa31LG11G12640 Aethionema arabicum HOM05D006533 ORTHO05D008625 1.3e-77 293.5 207 70.0
Ciclev10020455m.g Citrus clementina HOM05D006533 ORTHO05D008625 1.7e-77 293.1 213 72.3
Lsat_1_v5_gn_9_47461 Lactuca sativa HOM05D006533 ORTHO05D008625 1.7e-77 293.1 212 71.7
arahy.Tifrunner.gnm1.ann1.1W8L1U Arachis hypogaea HOM05D006533 ORTHO05D008625 8.4e-77 290.8 207 72.0
Manes.09G124800 Manihot esculenta HOM05D006533 ORTHO05D008625 1.4e-76 290.0 213 71.8
Sc06g0002540 Simmondsia chinensis HOM05D006533 ORTHO05D008625 9.3e-76 287.3 204 74.0
CSS0012834 Camellia sinensis var. sinensis HOM05D006533 ORTHO05D008625 1.6e-75 286.6 175 84.6
Lj3A887G72 Lonicera japonica HOM05D006533 ORTHO05D008625 4.6e-75 285.0 218 69.3
EL10Ac3g05080 Beta vulgaris HOM05D006533 ORTHO05D008625 3.9e-74 282.0 233 64.4
HanXRQChr05g0141721 Helianthus annuus HOM05D006533 ORTHO05D008625 8.7e-74 280.8 206 71.4
Cfa006012 Carpinus fangiana HOM05D006533 ORTHO05D008625 1.1e-73 280.4 206 70.9
PSO782G0079 Papaver somniferum HOM05D006533 ORTHO05D008625 1.9e-73 279.6 207 69.6
PSO063G2320 Papaver somniferum HOM05D006533 ORTHO05D008625 1.3e-72 276.9 205 69.3
TAR374G0999 Trochodendron aralioides HOM05D006533 ORTHO05D008625 2.2e-72 276.2 189 75.7
Aqoxy3G02101 Aquilegia oxysepala HOM05D006533 ORTHO05D008625 3.7e-72 275.4 208 68.8
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 4.1e-71 271.9 214 65.4
Hund09790 Selenicereus undatus HOM05D006533 ORTHO05D008625 4.1e-71 271.9 180 75.6
unitig_0.g2430 Utricularia gibba HOM05D006533 ORTHO05D008625 1.0e-69 267.3 205 64.9
COL.COLO4_35796 Corchorus olitorius HOM05D006533 ORTHO05D008625 2.9e-69 265.8 184 74.5
ATR0829G094 Amborella trichopoda HOM05D006533 ORTHO05D008625 3.8e-69 265.4 216 66.7
Duzib264G0907 Durio zibethinus HOM05D006533 ORTHO05D008625 1.1e-68 263.8 184 75.0
Nitab4.5_0001510g0030 Nicotiana tabacum HOM05D006533 ORTHO05D008625 5.5e-68 261.5 238 60.1
vmacro06509 Vaccinium macrocarpon HOM05D006533 ORTHO05D008625 5.5e-68 261.5 204 70.6
SEGI_31434 Sequoiadendron giganteum HOM05D006533 ORTHO05D008625 7.2e-68 261.2 208 66.3
MELO3C006767.2 Cucumis melo HOM05D006533 ORTHO05D008625 3.6e-67 258.8 188 69.1
Sabra06G0125800 Salix brachista HOM05D006533 ORTHO05D008625 4.6e-67 258.5 219 64.8
Peaxi162Scf00133g00721 Petunia axillaris HOM05D006533 ORTHO05D008625 1.4e-66 256.9 188 72.3
Nn1g01934 Nelumbo nucifera HOM05D006533 ORTHO05D008625 2.3e-66 256.1 181 73.5
MBI04_g36026_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 5.7e-65 251.5 174 72.4
Mapoly0015s0191 Marchantia polymorpha HOM05D006533 ORTHO05D008625 1.3e-64 250.4 219 62.1
HPP92_005443 Vanilla planifolia HOM05D006533 ORTHO05D008625 1.3e-64 250.4 203 65.5
SalBow4G1971 Salvia bowleyana HOM05D006533 ORTHO05D008625 3.7e-64 248.8 182 70.3
SalBow4G2334 Salvia bowleyana HOM05D006533 ORTHO05D008625 3.7e-64 248.8 182 70.3
Os06g0114600 Oryza sativa ssp. japonica HOM05D006533 ORTHO05D008625 3.2e-60 235.7 163 71.2
Nitab4.5_0005342g0010 Nicotiana tabacum HOM05D006533 ORTHO05D008625 5.5e-60 235.0 183 66.7
Pp3c15_5730 Physcomitrium patens HOM05D006533 ORTHO05D008625 2.7e-59 232.6 206 57.8
SMO340G0278 Selaginella moellendorffii HOM05D006533 ORTHO05D008625 4.7e-59 231.9 208 55.3
Hma1.2p1_3802F.1_g337635 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 7.4e-57 224.6 147 77.6
Rhsim03G0221300 Rhododendron simsii HOM05D006533 ORTHO05D008625 3.5e-54 215.7 174 67.8
Dinv17259 Davidia involucrata HOM05D006533 ORTHO05D008625 2.7e-51 206.1 121 86.0
Zm00001eb268960 Zea mays HOM05D006533 ORTHO05D008625 1.5e-49 200.3 136 73.5
CBR_g24301 Chara braunii HOM05D006533 ORTHO05D008625 1.1e-47 194.1 234 48.7
Psat2g075360 Pisum sativum HOM05D006533 ORTHO05D008625 3.4e-41 172.6 110 82.7
FAN01G0029 Fragaria x ananassa HOM05D006533 ORTHO05D008625 1.5e-33 147.1 88 75.0
QL09p024429 Quercus lobata HOM05D006533 ORTHO05D008625 2.8e-32 142.9 96 81.2
Hma1.2p1_0758F.1_g213747 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.1e-31 139.4 111 68.5
Hma1.2p1_0758F.1_g213741 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 3.5e-30 136.0 118 64.4
Hma1.2p1_0758F.1_g213730 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 5.9e-30 135.2 120 63.3
MBI06_g38701_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 5.9e-30 135.2 130 56.2
Hma1.2p1_0758F.1_g213704 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.5e-28 129.8 79 84.8
Hma1.2p1_0758F.1_g213725 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.5e-28 129.8 79 84.8
Hma1.2p1_0758F.1_g213746 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.5e-28 129.8 79 84.8
Hma1.2p1_3802F.1_g337637 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.5e-28 129.8 79 84.8
TPR.G37965 Trifolium pratense HOM05D006533 ORTHO05D008625 1.6e-27 127.1 84 83.3
MBI12_g01582_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 9.5e-20 101.3 109 50.5
MBI06_g38702_MAGBIO Magnolia biondii HOM05D006533 ORTHO05D008625 2.8e-19 99.8 71 69.0
Hma1.2p1_0649F.1_g195356 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.1e-11 73.6 64 65.6
Hma1.2p1_0649F.1_g195390 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.1e-11 73.6 64 65.6
Hma1.2p1_3802F.1_g337632 Hydrangea macrophylla HOM05D006533 ORTHO05D008625 2.1e-11 73.6 64 65.6
Haze_04836 Corylus avellana HOM05D006533 ORTHO05D008625 8.9e-10 68.2 42 73.8
MBI05_g26894_MAGBIO Magnolia biondii HOM05D003110 ORTHO05D003585 1.5e-09 67.4 57 59.6
Rhsim12G0119200 Rhododendron simsii HOM05D006533 ORTHO05D338813 4.9e-08 62.4 39 74.4
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.7e-06 56.6 94 43.6


User provided reference genes

Program Settings