Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21886 Trifolium pratense HOM05D003690 ORTHO05D028013 4.6e-29 131.0 88 100.0
TPR.G19744 Trifolium pratense HOM05D003690 ORTHO05D004920 6.7e-28 127.1 88 83.0
Medtr7g056733 Medicago truncatula HOM05D003690 ORTHO05D028013 1.6e-26 122.5 88 90.9
arahy.Tifrunner.gnm1.ann1.0Y3V4L Arachis hypogaea HOM05D003690 ORTHO05D004920 4.8e-26 120.9 88 79.5
VMungo0720G3088 Vigna mungo HOM05D003690 ORTHO05D004920 6.2e-26 120.6 88 92.0
Lj5g0003167 Lotus japonicus HOM05D003690 ORTHO05D004920 1.1e-25 119.8 88 86.4
Lj6g0012707 Lotus japonicus HOM05D003690 ORTHO05D004920 1.1e-25 119.8 88 86.4
arahy.Tifrunner.gnm1.ann1.27DWCJ Arachis hypogaea HOM05D003690 ORTHO05D004920 1.4e-25 119.4 88 77.3
Cpa.g.sc8.169 Carica papaya HOM05D003690 ORTHO05D004920 1.4e-25 119.4 88 88.6
Phvul.007G235000 Phaseolus vulgaris HOM05D003690 ORTHO05D004920 1.4e-25 119.4 88 77.3
Psat4g007640 Pisum sativum HOM05D003690 ORTHO05D004920 4.0e-25 117.9 88 92.0
Ciclev10019400m.g Citrus clementina HOM05D003690 ORTHO05D004920 6.9e-25 117.1 88 76.1
CsaV3_3G006620 Cucumis sativus L. HOM05D003690 ORTHO05D004920 4.5e-24 114.4 88 76.1
GSVIVG01028584001 Vitis vinifera HOM05D003690 ORTHO05D004920 4.5e-24 114.4 88 76.1
CDE11G0127 Ceratophyllum demersum HOM05D003690 ORTHO05D004920 5.8e-24 114.0 88 76.1
SGA_v2.0_scaffold1G00720 Striga asiatica HOM05D003690 ORTHO05D004920 5.8e-24 114.0 88 76.1
Medtr1g048030 Medicago truncatula HOM05D003690 ORTHO05D004920 7.6e-24 113.6 88 88.6
ClCG09G007250 Citrullus lanatus HOM05D003690 ORTHO05D004920 1.0e-23 113.2 88 75.0
ClCG10G007380 Citrullus lanatus HOM05D003690 ORTHO05D004920 1.0e-23 113.2 88 75.0
MELO3C015809.2 Cucumis melo HOM05D003690 ORTHO05D004920 1.0e-23 113.2 88 75.0
CsaV3_7G027900 Cucumis sativus L. HOM05D003690 ORTHO05D004920 1.0e-23 113.2 88 75.0
Eucgr.K03607 Eucalyptus grandis HOM05D003690 ORTHO05D004920 1.0e-23 113.2 88 73.9
ATR0315G112 Amborella trichopoda HOM05D003690 ORTHO05D004920 1.3e-23 112.8 88 76.1
Nitab4.5_0000866g0120 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.3e-23 112.8 88 76.1
Oeu020378.1 Olea europaea HOM05D003690 ORTHO05D004920 2.2e-23 112.1 88 75.0
CiPaw.04G105900 Carya illinoinensis HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Duzib133G1322 Durio zibethinus HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Duzib138G1284 Durio zibethinus HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Gohir.D07G162600 Gossypium hirsutum HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Gorai.001G186200 Gossypium raimondii HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Nn3g19937 Nelumbo nucifera HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Hund18349 Selenicereus undatus HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Hund18351 Selenicereus undatus HOM05D003690 ORTHO05D004920 2.9e-23 111.7 88 73.9
Nn3g19439 Nelumbo nucifera HOM05D003690 ORTHO05D004920 3.8e-23 111.3 88 73.9
Atru.chr3.3177 Acer truncatum HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 77.3
MSTRG.18384 Avicennia marina HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 73.9
Haze_24784 Corylus avellana HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 73.9
Glyma.10G122200 Glycine max HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 86.4
Glyma.20G073900 Glycine max HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 86.4
Nitab4.5_0003790g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 75.0
Potri.002G241100 Populus trichocarpa HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 73.9
Sc09g0009180 Simmondsia chinensis HOM05D003690 ORTHO05D004920 4.9e-23 110.9 88 73.9
COL.COLO4_09004 Corchorus olitorius HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 72.7
Gohir.A11G136700 Gossypium hirsutum HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 72.7
Gohir.D11G143000 Gossypium hirsutum HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 72.7
Gorai.007G153300 Gossypium raimondii HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 72.7
QL07p005142 Quercus lobata HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 73.9
SGA_v2.0_scaffold8G04649 Striga asiatica HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 84.1
Thecc.01G227500 Theobroma cacao HOM05D003690 ORTHO05D004920 6.5e-23 110.5 88 72.7
Manes.13G044800 Manihot esculenta HOM05D003690 ORTHO05D004920 8.4e-23 110.2 88 70.5
Sed0007747 Sechium edule HOM05D003690 ORTHO05D004920 8.4e-23 110.2 88 71.6
Sed0008284 Sechium edule HOM05D003690 ORTHO05D004920 8.4e-23 110.2 88 71.6
Cc01_g17200 Coffea canephora HOM05D003690 ORTHO05D004920 1.1e-22 109.8 88 73.9
THA.LOC104820116 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 1.1e-22 109.8 88 72.7
CARHR081630 Cardamine hirsuta HOM05D003690 ORTHO05D004920 1.4e-22 109.4 88 72.7
Nitab4.5_0002085g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.4e-22 109.4 88 73.9
QL12p004452 Quercus lobata HOM05D003690 ORTHO05D004920 1.4e-22 109.4 88 73.9
FvH4_3g29200 Fragaria vesca HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
FAN11G3512 Fragaria x ananassa HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
FAN16G3655 Fragaria x ananassa HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
FAN21G1197 Fragaria x ananassa HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
RcHm_v2.0_Chr6g0285031 Rosa chinensis HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
PGSC0003DMG400020159 Solanum tuberosum HOM05D003690 ORTHO05D004920 1.9e-22 109.0 88 73.9
Gohir.A07G156300 Gossypium hirsutum HOM05D003690 ORTHO05D004920 2.5e-22 108.6 88 71.6
Lalb_Chr03g0036581 Lupinus albus HOM05D003690 ORTHO05D004920 2.5e-22 108.6 88 73.9
Aqoxy5G01520 Aquilegia oxysepala HOM05D003690 ORTHO05D004920 3.2e-22 108.2 88 71.6
Solyc09g061430.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 3.2e-22 108.2 88 73.9
Sopen09g024250 Solanum pennellii HOM05D003690 ORTHO05D004920 3.2e-22 108.2 88 73.9
PGSC0003DMG400028012 Solanum tuberosum HOM05D003690 ORTHO05D004920 3.2e-22 108.2 88 73.9
Dinv04660 Davidia involucrata HOM05D003690 ORTHO05D004920 4.2e-22 107.8 88 72.7
Sc01g0007050 Simmondsia chinensis HOM05D003690 ORTHO05D004920 4.2e-22 107.8 88 71.6
THA.LOC104802677 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 4.2e-22 107.8 88 72.7
TWI18G0354 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 4.2e-22 107.8 88 80.7
Actinidia09489 Actinidia chinensis HOM05D003690 ORTHO05D004920 5.5e-22 107.5 88 71.6
Sopen06g034900 Solanum pennellii HOM05D003690 ORTHO05D004920 5.5e-22 107.5 88 72.7
EL10Ac7g17783 Beta vulgaris HOM05D003690 ORTHO05D004920 7.1e-22 107.1 88 71.6
Ca_13246_v3 Cicer arietinum L. HOM05D003690 ORTHO05D004920 9.3e-22 106.7 77 76.6
PGR044G2123 Punica granatum HOM05D003690 ORTHO05D004920 9.3e-22 106.7 88 71.6
Sabra02G0183700 Salix brachista HOM05D003690 ORTHO05D004920 9.3e-22 106.7 88 70.5
CSS0014117 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 1.2e-21 106.3 88 70.5
CSS0044814 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 1.2e-21 106.3 88 70.5
SalBow2G1746 Salvia bowleyana HOM05D003690 ORTHO05D004920 1.2e-21 106.3 88 71.6
Ah.08g213950 Amaranthus hybridus HOM05D003690 ORTHO05D004920 1.6e-21 105.9 88 70.5
FAN25G2487 Fragaria x ananassa HOM05D003690 ORTHO05D004920 1.6e-21 105.9 88 71.6
TAR362G0926 Trochodendron aralioides HOM05D003690 ORTHO05D004920 1.6e-21 105.9 88 84.1
Aa31LG5G17610 Aethionema arabicum HOM05D003690 ORTHO05D004920 2.1e-21 105.5 88 69.3
CANSAT01G2208 Cannabis sativa HOM05D003690 ORTHO05D004920 2.1e-21 105.5 88 69.3
Rhsim01G0256500 Rhododendron simsii HOM05D003690 ORTHO05D004920 2.1e-21 105.5 88 70.5
Dinv19210 Davidia involucrata HOM05D003690 ORTHO05D004920 3.5e-21 104.8 88 77.3
Thhalv10020356m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 3.5e-21 104.8 88 69.3
Sp3g05990 Schrenkiella parvula HOM05D003690 ORTHO05D004920 3.5e-21 104.8 88 69.3
Prupe.8G204300 Prunus persica HOM05D003690 ORTHO05D004920 4.6e-21 104.4 88 72.7
unitig_8.g3755 Utricularia gibba HOM05D003690 ORTHO05D004920 4.6e-21 104.4 82 72.0
Thhalv10002456m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 7.9e-21 103.6 88 68.2
SEGI_02950 Sequoiadendron giganteum HOM05D003690 ORTHO05D004920 1.0e-20 103.2 88 68.2
Solyc06g083520.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 1.0e-20 103.2 88 72.7
AL3G18270 Arabidopsis lyrata HOM05D003690 ORTHO05D004920 1.3e-20 102.8 88 68.2
TWI36G0757 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 2.3e-20 102.1 88 83.0
AT3G07050 Arabidopsis thaliana HOM05D003690 ORTHO05D004920 3.0e-20 101.7 88 67.0
Lj2C1133T2 Lonicera japonica HOM05D003690 ORTHO05D004920 3.0e-20 101.7 89 69.7
Os01g0375000 Oryza sativa ssp. japonica HOM05D003690 ORTHO05D004920 3.0e-20 101.7 88 79.5
BcaB04g21307 Brassica carinata HOM05D003690 ORTHO05D004920 3.9e-20 101.3 88 65.9
CAN.G771.63 Capsicum annuum HOM05D003690 ORTHO05D004920 5.1e-20 100.9 85 70.6
Lsat_1_v5_gn_5_179901 Lactuca sativa HOM05D003690 ORTHO05D004920 5.1e-20 100.9 88 65.9
A03p35040 Brassica napus HOM05D003690 ORTHO05D004920 6.7e-20 100.5 88 65.9
C03p42620 Brassica napus HOM05D003690 ORTHO05D004920 6.7e-20 100.5 88 65.9
BolC3t16532H Brassica oleracea HOM05D003690 ORTHO05D004920 6.7e-20 100.5 88 65.9
AUR62031840 Chenopodium quinoa HOM05D003690 ORTHO05D004920 1.5e-19 99.4 88 71.6
AUR62008870 Chenopodium quinoa HOM05D003690 ORTHO05D004920 1.9e-19 99.0 88 71.6
ECA248G3114 Erigeron canadensis HOM05D003690 ORTHO05D004920 1.9e-19 99.0 88 64.8
Zm00001eb049610 Zea mays HOM05D003690 ORTHO05D004920 1.9e-19 99.0 89 67.4
Pp3c12_9000 Physcomitrium patens HOM05D003690 ORTHO05D004920 3.3e-19 98.2 91 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4000 Anthoceros agrestis HOM05D003690 ORTHO05D004920 4.3e-19 97.8 88 65.9
BcaC09g47936 Brassica carinata HOM05D003690 ORTHO05D004920 4.3e-19 97.8 88 64.8
DCAR_012635 Daucus carota HOM05D003690 ORTHO05D004920 7.4e-19 97.1 82 68.3
vmacro14761 Vaccinium macrocarpon HOM05D003690 ORTHO05D004920 7.4e-19 97.1 82 68.3
Peaxi162Scf00107g01320 Petunia axillaris HOM05D003690 ORTHO05D004920 9.7e-19 96.7 81 69.1
Mapoly0030s0053 Marchantia polymorpha HOM05D003690 ORTHO05D004920 2.2e-18 95.5 88 69.3
Zm00001eb219390 Zea mays HOM05D003690 ORTHO05D004920 2.2e-18 95.5 89 75.3
BraA03t12684Z Brassica rapa HOM05D003690 ORTHO05D004920 4.8e-18 94.4 82 64.6
Migut.N02264 Erythranthe guttata HOM05D003690 ORTHO05D004920 4.8e-18 94.4 88 70.5
BolC1t05572H Brassica oleracea HOM05D003690 ORTHO05D004920 1.1e-17 93.2 82 63.4
BraA01t04401Z Brassica rapa HOM05D003690 ORTHO05D004920 1.1e-17 93.2 82 63.4
Nitab4.5_0004922g0050 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.4e-17 92.8 82 67.1
MD10G1165800 Malus domestica HOM05D003690 ORTHO05D004920 9.0e-17 90.1 77 68.8
A05p41150 Brassica napus HOM05D003690 ORTHO05D004920 1.2e-16 89.7 88 61.4
BraA05t22841Z Brassica rapa HOM05D003690 ORTHO05D004920 1.2e-16 89.7 88 61.4
MD05G1177400 Malus domestica HOM05D003690 ORTHO05D004920 1.5e-16 89.4 77 68.8
PSO210G6754 Papaver somniferum HOM05D003690 ORTHO05D004920 1.5e-16 89.4 77 83.1
BcaC05g29835 Brassica carinata HOM05D003690 ORTHO05D004920 5.9e-16 87.4 88 60.2
C05p60340 Brassica napus HOM05D003690 ORTHO05D004920 5.9e-16 87.4 88 60.2
BolC5t34681H Brassica oleracea HOM05D003690 ORTHO05D004920 5.9e-16 87.4 88 60.2
HPP92_023533 Vanilla planifolia HOM05D003690 ORTHO05D004920 5.9e-16 87.4 88 62.5
BcaC05g29759 Brassica carinata HOM05D003690 ORTHO05D004920 7.7e-16 87.0 88 61.4
PSO170G2973 Papaver somniferum HOM05D003690 ORTHO05D004920 7.7e-16 87.0 77 81.8
SHI08009 Sapria himalayana HOM05D003690 ORTHO05D004920 2.2e-15 85.5 81 61.7
BolC9t58687H Brassica oleracea HOM05D003690 ORTHO05D028013 1.1e-14 83.2 82 58.5
HanXRQChr01g0014631 Helianthus annuus HOM05D003690 ORTHO05D004920 4.2e-14 81.3 73 61.6
SalBow7G4783 Salvia bowleyana HOM05D003690 ORTHO05D004920 7.2e-14 80.5 88 73.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.7e-13 78.6 87 54.0
C09p58230 Brassica napus HOM05D003690 ORTHO05D028013 2.7e-13 78.6 87 54.0
HanXRQChr10g0287311 Helianthus annuus HOM05D003690 ORTHO05D004920 2.7e-13 78.6 88 54.5
Migut.D00526 Erythranthe guttata HOM05D003690 ORTHO05D004920 1.8e-09 65.9 88 48.9
CBR_g19336 Chara braunii HOM05D003690 ORTHO05D004920 9.1e-09 63.5 82 67.1
SMO147G0351 Selaginella moellendorffii HOM05D003690 ORTHO05D004920 2.6e-08 62.0 45 73.3
Cre12.g533050 Chlamydomonas reinhardtii HOM05D003690 ORTHO05D004920 1.3e-07 59.7 90 42.2
MCO01G731 Micromonas commoda HOM05D003690 ORTHO05D004920 2.9e-07 58.5 85 44.7
DCAR_010523 Daucus carota HOM05D000103 ORTHO05D003225 3.8e-07 58.2 40 75.0
Lj1C84T11 Lonicera japonica HOM05D003690 ORTHO05D004920 2.5e-06 55.5 89 57.3


User provided reference genes

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