Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21718 Trifolium pratense HOM05D008280 ORTHO05D010492 2.3e-190 668.7 331 100.0
Medtr0141s0020 Medicago truncatula HOM05D008280 ORTHO05D010492 6.7e-113 411.4 207 98.6
Lj5g0023723 Lotus japonicus HOM05D008280 ORTHO05D010492 4.0e-110 402.1 207 97.1
LjContig00315g0024501 Lotus japonicus HOM05D008280 ORTHO05D010492 4.0e-110 402.1 207 97.1
Lalb_Chr00c29g0408141 Lupinus albus HOM05D008280 ORTHO05D010492 5.1e-105 385.2 207 92.8
Sed0015016 Sechium edule HOM05D008280 ORTHO05D010492 1.5e-104 383.6 207 91.3
RcHm_v2.0_MTg0498291 Rosa chinensis HOM05D008280 ORTHO05D010492 9.6e-104 380.9 208 91.3
arahy.Tifrunner.gnm1.ann1.U3KMBF Arachis hypogaea HOM05D008280 ORTHO05D010492 2.4e-102 376.3 195 95.4
CAN.G1126.5 Capsicum annuum HOM05D008280 ORTHO05D010492 2.0e-101 373.2 207 91.3
CAN.G1159.15 Capsicum annuum HOM05D008280 ORTHO05D010492 2.0e-101 373.2 207 91.3
CAN.G266.10 Capsicum annuum HOM05D008280 ORTHO05D010492 2.0e-101 373.2 207 91.3
Solyc00g020040.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 2.0e-101 373.2 207 91.3
BNapus_Darmor_BZH_scaffold_234p00070 Brassica napus HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
BolSC28t60354H Brassica oleracea HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
BraSC159t45719Z Brassica rapa HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
BraSC77t46666Z Brassica rapa HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
CARHR282640 Cardamine hirsuta HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
Sp3g25740 Schrenkiella parvula HOM05D008280 ORTHO05D010492 7.6e-101 371.3 207 90.8
Lj2P1227T101 Lonicera japonica HOM05D008280 ORTHO05D010492 1.9e-99 366.7 207 89.9
ATMG00110 Arabidopsis thaliana HOM05D008280 ORTHO05D010492 5.5e-99 365.2 207 89.9
CANSAT16G0019 Cannabis sativa HOM05D008280 ORTHO05D010492 9.3e-99 364.4 207 89.9
DCAR_032445 Daucus carota HOM05D008280 ORTHO05D010492 9.3e-99 364.4 207 88.9
SalBow1G8376 Salvia bowleyana HOM05D008280 ORTHO05D010492 4.6e-98 362.1 207 88.9
HanXRQMTg0579251 Helianthus annuus HOM05D008280 ORTHO05D010492 6.1e-98 361.7 207 88.9
Nn1g10160 Nelumbo nucifera HOM05D008280 ORTHO05D010492 1.3e-97 360.5 207 88.4
Lsat_1_v5_gn_7_99841 Lactuca sativa HOM05D008280 ORTHO05D010492 1.1e-96 357.5 207 87.9
Potri.007G061721 Populus trichocarpa HOM05D008280 ORTHO05D010492 1.3e-95 354.0 207 88.4
BraSC48t46257Z Brassica rapa HOM05D008280 ORTHO05D010492 1.6e-95 353.6 196 90.8
CAN.G72.16 Capsicum annuum HOM05D008280 ORTHO05D010492 1.4e-91 340.5 207 84.5
Eucgr.E02151 Eucalyptus grandis HOM05D008280 ORTHO05D010492 7.2e-83 311.6 177 89.3
CAN.G362.37 Capsicum annuum HOM05D008280 ORTHO05D010492 7.9e-82 308.1 207 79.2
arahy.Tifrunner.gnm1.ann1.9X0QWA Arachis hypogaea HOM05D008280 ORTHO05D010492 6.7e-81 305.1 160 94.4
Sed0028122 Sechium edule HOM05D008280 ORTHO05D010492 1.5e-80 303.9 207 74.9
arahy.Tifrunner.gnm1.ann1.TAQ3SD Arachis hypogaea HOM05D008280 ORTHO05D010492 3.3e-80 302.8 160 93.8
Nitab4.5_0009703g0040 Nicotiana tabacum HOM05D008280 ORTHO05D010492 1.7e-76 290.4 161 89.4
Nitab4.5_0001796g0300 Nicotiana tabacum HOM05D008280 ORTHO05D010492 5.0e-76 288.9 207 75.8
Nitab4.5_0004471g0100 Nicotiana tabacum HOM05D008280 ORTHO05D010492 1.5e-72 277.3 178 83.1
MBI05_g23314_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 2.3e-65 253.4 150 88.0
SHI07395 Sapria himalayana HOM05D008280 ORTHO05D010492 2.2e-63 246.9 153 81.7
Medtr0094s0120 Medicago truncatula HOM05D008280 ORTHO05D010492 7.7e-61 238.4 132 89.4
Solyc11g028160.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 1.3e-55 221.1 146 79.5
TAR371G0473 Trochodendron aralioides HOM05D008280 ORTHO05D010492 7.0e-54 215.3 158 74.1
CAN.G21.55 Capsicum annuum HOM05D008280 ORTHO05D010492 1.8e-49 200.7 114 89.5
Nn7g37645 Nelumbo nucifera HOM05D008280 ORTHO05D010492 4.3e-43 179.5 100 87.0
Psat6g067520 Pisum sativum HOM05D009044 ORTHO05D011261 4.3e-43 179.5 99 85.9
unitig_87.g27971 Utricularia gibba HOM05D008280 ORTHO05D010492 2.1e-42 177.2 99 90.9
CAN.G676.27 Capsicum annuum HOM05D008280 ORTHO05D010492 7.5e-40 168.7 104 82.7
CAN.G1321.8 Capsicum annuum HOM05D009044 ORTHO05D011261 2.2e-39 167.2 125 65.6
CAN.G584.15 Capsicum annuum HOM05D009044 ORTHO05D011261 2.9e-39 166.8 125 64.8
TPR.G10887 Trifolium pratense HOM05D009044 ORTHO05D011261 1.9e-38 164.1 100 79.0
EL10Ac5g11444 Beta vulgaris HOM05D009044 ORTHO05D011261 9.2e-38 161.8 124 64.5
Psat1g132520 Pisum sativum HOM05D008280 ORTHO05D010492 9.2e-38 161.8 87 96.6
HanXRQChr05g0151451 Helianthus annuus HOM05D008280 ORTHO05D010492 1.2e-37 161.4 96 83.3
Lsat_1_v5_gn_7_96601 Lactuca sativa HOM05D008280 ORTHO05D010492 1.6e-37 161.0 99 83.8
Nitab4.5_0000978g0030 Nicotiana tabacum HOM05D008280 ORTHO05D010492 2.0e-37 160.6 91 90.1
CAN.G950.5 Capsicum annuum HOM05D009044 ORTHO05D011261 1.0e-36 158.3 98 73.5
Psat4g178280 Pisum sativum HOM05D009044 ORTHO05D011261 1.7e-36 157.5 81 87.7
CAN.G1082.4 Capsicum annuum HOM05D009044 ORTHO05D011261 1.9e-35 154.1 119 58.8
Ca_30339_v3 Cicer arietinum L. HOM05D008280 ORTHO05D010492 7.3e-35 152.1 146 59.6
MBI09_g03548_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 3.1e-33 146.7 123 65.0
arahy.Tifrunner.gnm1.ann1.2Y9TRI Arachis hypogaea HOM05D009044 ORTHO05D011261 4.4e-32 142.9 100 65.0
HanXRQChr03g0087181 Helianthus annuus HOM05D008280 ORTHO05D010492 8.3e-31 138.7 99 75.8
Cc00_g01620 Coffea canephora HOM05D009044 ORTHO05D011261 1.1e-30 138.3 123 55.3
Migut.E01132 Erythranthe guttata HOM05D009044 ORTHO05D011261 4.0e-25 119.8 71 73.2
arahy.Tifrunner.gnm1.ann1.4L1UA2 Arachis hypogaea HOM05D009044 ORTHO05D011261 6.8e-25 119.0 127 48.8
arahy.Tifrunner.gnm1.ann1.QUEV48 Arachis hypogaea HOM05D009044 ORTHO05D011261 4.4e-24 116.3 127 48.0
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 4.4e-24 116.3 66 90.9
Lalb_Chr00c21g0405861 Lupinus albus HOM05D009044 ORTHO05D011261 9.9e-24 115.2 123 47.2
Lalb_Chr00c24g0406991 Lupinus albus HOM05D009044 ORTHO05D011261 9.9e-24 115.2 123 47.2
arahy.Tifrunner.gnm1.ann1.AMEH8M Arachis hypogaea HOM05D009044 ORTHO05D011261 1.7e-23 114.4 124 49.2
arahy.Tifrunner.gnm1.ann1.K6P20N Arachis hypogaea HOM05D009044 ORTHO05D011261 1.7e-23 114.4 124 49.2
arahy.Tifrunner.gnm1.ann1.TYE1TB Arachis hypogaea HOM05D009044 ORTHO05D011261 1.7e-23 114.4 124 49.2
Gohir.A13G092605 Gossypium hirsutum HOM05D008280 ORTHO05D010492 2.4e-22 110.5 67 86.6
Lj2C1224T22 Lonicera japonica HOM05D008280 ORTHO05D010492 4.6e-21 106.3 59 91.5
arahy.Tifrunner.gnm1.ann1.ES8831 Arachis hypogaea HOM05D009044 ORTHO05D011261 5.6e-19 99.4 125 45.6
arahy.Tifrunner.gnm1.ann1.P3P6H5 Arachis hypogaea HOM05D009044 ORTHO05D002807 5.6e-19 99.4 125 45.6
CAN.G131.12 Capsicum annuum HOM05D009044 ORTHO05D011261 1.2e-16 91.7 113 50.4
CAN.G1690.1 Capsicum annuum HOM05D009044 ORTHO05D011261 1.5e-16 91.3 112 45.5
CAN.G577.5 Capsicum annuum HOM05D009044 ORTHO05D011261 1.5e-16 91.3 112 45.5
CAN.G78.3 Capsicum annuum HOM05D009044 ORTHO05D011261 5.8e-16 89.4 112 45.5
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 5.8e-16 89.4 58 72.4
Nitab4.5_0012260g0010 Nicotiana tabacum HOM05D009044 ORTHO05D011261 1.1e-14 85.1 97 47.4
QL08p039717 Quercus lobata HOM05D008280 ORTHO05D010492 5.4e-14 82.8 65 70.8
Sopen10g006300 Solanum pennellii HOM05D009044 ORTHO05D011261 1.2e-13 81.6 112 43.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.5e-13 80.1 84 52.4
PGSC0003DMG402022238 Solanum tuberosum HOM05D009044 ORTHO05D011261 1.0e-12 78.6 105 45.7
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 5.1e-12 76.3 107 42.1
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 9.6e-11 72.0 123 34.1
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 6.2e-10 69.3 62 56.5
Peaxi162Scf00622g00015 Petunia axillaris HOM05D009044 ORTHO05D011261 6.2e-10 69.3 123 36.6
Lsat_1_v5_gn_5_126261 Lactuca sativa HOM05D009044 ORTHO05D011261 3.1e-09 67.0 124 34.7
Lsat_1_v5_gn_6_67941 Lactuca sativa HOM05D009044 ORTHO05D011261 3.1e-09 67.0 124 34.7
Lsat_1_v5_gn_9_49181 Lactuca sativa HOM05D009044 ORTHO05D011261 3.1e-09 67.0 124 34.7
Psat0s922g0200 Pisum sativum HOM05D014813 ORTHO05D011261 9.0e-09 65.5 53 56.6
Lsat_1_v5_gn_3_62201 Lactuca sativa HOM05D009044 ORTHO05D011261 1.3e-07 61.6 49 55.1
SHI01507 Sapria himalayana HOM05D008280 ORTHO05D010492 2.4e-06 57.4 88 45.5
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 7.1e-06 55.8 50 48.0


User provided reference genes

Program Settings