Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 7.4e-262 907.1 629 100.0
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.2e-189 666.4 646 67.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.3e-173 614.0 636 69.2
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.6e-161 571.2 640 67.0
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 3.7e-128 463.0 465 55.7
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 4.8e-128 462.6 692 51.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.0e-125 454.9 491 53.8
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 2.7e-123 446.8 498 54.2
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-114 418.3 497 51.5
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.2e-112 410.6 580 58.4
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.8e-109 399.8 517 49.1
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.2e-107 394.8 484 53.7
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.5e-86 323.6 487 43.1
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.2e-84 316.6 430 50.9
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 5.5e-84 316.2 414 47.1
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 7.2e-84 315.8 431 51.0
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.7e-83 313.2 396 49.0
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.7e-83 313.2 417 47.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 8.0e-83 312.4 404 47.0
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.4e-82 311.6 377 50.9
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.3e-82 310.8 433 46.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.5e-81 305.8 412 48.5
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.3e-80 305.1 368 50.3
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.3e-80 302.8 383 49.1
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 6.3e-80 302.8 482 42.7
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 3.1e-79 300.4 499 43.5
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.0e-79 299.3 407 51.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 5.9e-78 296.2 419 44.9
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.3e-77 295.0 376 48.9
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-77 295.0 421 47.3
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-77 295.0 421 47.3
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.8e-77 293.5 413 46.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 8.6e-77 292.4 476 41.8
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 3.3e-76 290.4 333 51.1
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 4.3e-76 290.0 380 47.4
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.2e-75 288.5 424 46.5
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-75 288.5 394 48.0
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 2.1e-75 287.7 406 47.0
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 3.0e-74 283.9 418 46.4
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 4.0e-74 283.5 497 41.9
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.2e-74 283.1 392 48.0
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 8.9e-74 282.3 494 40.1
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.0e-73 281.2 384 46.9
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.8e-73 279.6 375 47.5
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.7e-72 276.9 408 45.1
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.7e-72 276.9 399 45.6
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.7e-72 276.9 407 45.2
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.4e-72 276.2 196 70.9
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 6.4e-72 276.2 479 41.3
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 8.3e-72 275.8 487 41.3
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.1e-71 275.4 370 52.7
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.8e-71 274.6 479 41.1
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.8e-71 274.6 421 43.0
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.4e-71 274.2 489 40.5
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.4e-71 274.2 408 45.1
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 5.4e-71 273.1 472 46.8
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 7.0e-71 272.7 336 51.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.2e-70 271.9 479 40.7
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.5e-70 270.4 399 45.6
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 4.6e-70 270.0 197 70.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.1e-68 265.4 202 64.4
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.1e-68 265.4 389 46.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.5e-68 265.0 473 46.7
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.5e-68 265.0 528 45.6
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.9e-68 264.6 392 44.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.5e-68 264.2 196 65.3
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 2.5e-68 264.2 395 45.8
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 7.3e-68 262.7 390 46.9
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.6e-67 261.5 186 69.4
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.6e-67 261.5 361 44.0
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 2.8e-67 260.8 416 44.5
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 2.8e-67 260.8 350 48.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 3.6e-67 260.4 217 62.2
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 4.7e-67 260.0 213 65.3
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.2e-67 259.6 399 45.9
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.2e-67 259.6 399 45.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 8.0e-67 259.2 196 64.8
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.3e-66 257.7 203 66.5
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.1e-66 257.3 357 47.3
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.0e-66 256.9 210 63.3
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 5.2e-66 256.5 517 40.6
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 8.9e-66 255.8 191 69.6
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.2e-65 255.4 484 39.0
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 4.4e-65 253.4 210 62.9
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.7e-64 251.5 389 44.5
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.2e-64 251.1 209 64.6
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.2e-64 251.1 356 46.9
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.9e-64 250.8 378 48.1
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 8.3e-64 249.2 200 63.0
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-63 248.8 213 63.4
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.9e-63 248.1 416 39.7
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.4e-63 247.7 202 62.9
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 5.4e-63 246.5 208 64.4
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.4e-63 246.5 534 36.9
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.6e-62 245.0 202 64.9
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 4.6e-62 243.4 207 60.9
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.6e-62 243.4 206 64.6
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 7.8e-62 242.7 228 58.8
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.7e-61 241.5 197 64.0
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.9e-61 240.4 405 41.5
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 3.9e-61 240.4 193 63.7
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.9e-61 240.4 445 41.1
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 6.6e-61 239.6 189 65.6
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 6.6e-61 239.6 189 65.6
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 8.6e-61 239.2 195 64.1
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 8.6e-61 239.2 202 63.4
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.3e-60 236.9 405 42.0
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 5.2e-58 229.9 211 61.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 6.8e-58 229.6 203 61.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 6.8e-58 229.6 214 58.4
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.0e-57 228.0 379 43.0
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 4.4e-57 226.9 202 58.4
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.7e-56 224.9 202 58.4
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.2e-56 224.6 397 38.3
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 3.7e-56 223.8 182 64.3
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 4.9e-56 223.4 357 41.7
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.9e-55 221.5 224 55.8
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.1e-54 218.0 180 58.3
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.7e-53 214.9 185 59.5
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.3e-53 214.5 180 60.6
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 6.6e-53 213.0 389 40.6
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.9e-52 211.5 202 57.4
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.9e-52 211.5 166 65.7
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.3e-52 210.3 179 60.9
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.6e-51 208.4 355 40.6
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 8.1e-51 206.1 202 54.0
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.4e-49 200.3 197 51.3
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.8e-48 197.2 186 55.4
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 8.4e-48 196.1 164 61.6
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-47 195.3 150 65.3
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.0e-45 187.6 213 50.7
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.1e-42 179.1 200 51.5
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.4e-39 168.7 171 54.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.5e-38 164.1 162 54.9
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 6.6e-37 159.8 215 41.9
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 8.7e-37 159.5 96 82.3
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 1.9e-36 158.3 187 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.3e-35 155.6 216 44.0
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.5e-33 148.7 137 56.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.8e-33 146.7 141 51.8
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.0e-30 136.7 417 31.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 6.2e-27 126.7 98 64.3
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 5.3e-26 123.6 98 63.3
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 6.5e-16 90.1 83 55.4
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 9.3e-15 86.3 170 34.1
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 3.0e-13 81.3 82 58.5
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.6e-11 75.5 139 38.1
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 4.1e-10 70.9 143 34.3
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 7.2e-07 60.1 59 50.8
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 2.1e-06 58.5 101 35.6


User provided reference genes

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