Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2153 Trifolium pratense HOM05D002502 ORTHO05D003592 3.5e-50 201.4 111 100.0
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 6.7e-17 90.9 114 57.9
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.9e-16 89.4 120 55.8
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 2.5e-16 89.0 114 56.1
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 2.5e-16 89.0 120 55.8
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 3.3e-16 88.6 120 53.3
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 4.3e-16 88.2 120 55.0
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 4.3e-16 88.2 120 53.3
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 4.3e-16 88.2 120 55.8
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 4.3e-16 88.2 114 56.1
Cpa.g.c38405.1 Carica papaya HOM05D002502 ORTHO05D003592 7.4e-16 87.4 120 55.8
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 53.3
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 9.7e-16 87.0 114 56.1
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 9.7e-16 87.0 114 56.1
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 52.5
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 55.0
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 55.0
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 55.0
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 55.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 9.7e-16 87.0 115 54.8
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 9.7e-16 87.0 115 54.8
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 52.5
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 9.7e-16 87.0 120 55.0
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 9.7e-16 87.0 114 56.1
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 55.3
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 55.3
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 55.3
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 55.3
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 55.3
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 1.3e-15 86.7 120 54.2
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.3e-15 86.7 81 67.9
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.3e-15 86.7 120 55.0
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 1.3e-15 86.7 114 56.1
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 1.6e-15 86.3 114 55.3
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.2e-15 85.9 115 54.8
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.2e-15 85.9 115 54.8
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 55.0
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 2.2e-15 85.9 117 53.8
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 55.0
Lsat_1_v5_gn_8_160220 Lactuca sativa HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 51.7
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 2.2e-15 85.9 119 55.5
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 54.2
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 53.3
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 53.3
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 53.3
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 2.2e-15 85.9 114 55.3
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 2.2e-15 85.9 120 55.0
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.8e-15 85.5 115 52.2
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.8e-15 85.5 115 52.2
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 54.2
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 53.3
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 52.5
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 55.0
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 52.5
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 52.5
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 2.8e-15 85.5 116 54.3
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 54.2
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 2.8e-15 85.5 120 52.5
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 2.8e-15 85.5 115 53.9
TAR365G0488 Trochodendron aralioides HOM05D002502 ORTHO05D003592 2.8e-15 85.5 81 67.9
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 52.6
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 52.6
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 54.4
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 3.7e-15 85.1 120 52.5
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 54.4
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 3.7e-15 85.1 120 53.3
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 3.7e-15 85.1 120 53.3
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 54.4
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 54.4
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 3.7e-15 85.1 114 54.4
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 4.8e-15 84.7 115 51.3
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 4.8e-15 84.7 117 55.6
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 4.8e-15 84.7 114 54.4
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 4.8e-15 84.7 114 55.3
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 4.8e-15 84.7 114 54.4
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 4.8e-15 84.7 115 53.0
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 4.8e-15 84.7 120 53.3
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 4.8e-15 84.7 114 54.4
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 6.3e-15 84.3 114 51.8
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 6.3e-15 84.3 114 51.8
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 6.3e-15 84.3 121 50.4
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 6.3e-15 84.3 114 53.5
Nn1g08184 Nelumbo nucifera HOM05D002502 ORTHO05D003592 6.3e-15 84.3 114 54.4
RcHm_v2.0_Chr3g0491451 Rosa chinensis HOM05D002502 ORTHO05D003592 6.3e-15 84.3 120 52.5
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 8.2e-15 84.0 118 55.1
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 8.2e-15 84.0 118 52.5
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 50.9
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 8.2e-15 84.0 114 51.8
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 8.2e-15 84.0 82 67.1
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 8.2e-15 84.0 82 67.1
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 8.2e-15 84.0 120 50.0
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 8.2e-15 84.0 120 50.0
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 1.1e-14 83.6 120 52.5
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.1e-14 83.6 114 52.6
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 1.1e-14 83.6 114 50.9
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.1e-14 83.6 114 55.3
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 1.1e-14 83.6 114 50.9
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 1.1e-14 83.6 120 53.3
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 1.4e-14 83.2 114 50.9
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.4e-14 83.2 114 50.9
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.8e-14 82.8 114 53.5
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.8e-14 82.8 115 50.4
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.8e-14 82.8 114 53.5
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 1.8e-14 82.8 114 53.5
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 1.8e-14 82.8 114 53.5
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 1.8e-14 82.8 117 53.0
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 1.8e-14 82.8 117 53.0
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 1.8e-14 82.8 114 53.5
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 2.4e-14 82.4 120 51.7
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 2.4e-14 82.4 118 50.0
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 2.4e-14 82.4 120 54.2
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 2.4e-14 82.4 114 51.8
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 2.4e-14 82.4 114 50.9
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 3.1e-14 82.0 114 53.5
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 3.1e-14 82.0 114 55.3
Prupe.5G046000 Prunus persica HOM05D002502 ORTHO05D003592 3.1e-14 82.0 114 54.4
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 3.1e-14 82.0 120 52.5
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 3.1e-14 82.0 120 52.5
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 4.1e-14 81.6 115 50.4
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 4.1e-14 81.6 118 50.0
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 5.3e-14 81.3 120 53.3
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 5.3e-14 81.3 114 52.6
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 9.0e-14 80.5 120 49.2
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 9.0e-14 80.5 114 53.5
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 9.0e-14 80.5 120 52.5
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 9.0e-14 80.5 114 50.0
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 1.5e-13 79.7 111 54.1
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 2.0e-13 79.3 81 59.3
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 2.0e-13 79.3 81 59.3
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.4e-13 78.6 125 47.2
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.4e-13 78.6 120 52.5
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 3.4e-13 78.6 81 58.0
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 5.9e-13 77.8 81 58.0
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 5.9e-13 77.8 118 50.8
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 7.6e-13 77.4 81 60.5
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 7.6e-13 77.4 115 47.8
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 1.7e-12 76.3 82 54.9
CARHR010400 Cardamine hirsuta HOM05D002502 ORTHO05D003592 2.2e-12 75.9 118 46.6
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 2.2e-12 75.9 81 56.8
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 2.9e-12 75.5 116 46.6
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 2.9e-12 75.5 116 53.4
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 2.9e-12 75.5 114 50.9
Sabra09G0039400 Salix brachista HOM05D002502 ORTHO05D003592 2.9e-12 75.5 84 59.5
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 3.8e-12 75.1 114 46.5
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 5.0e-12 74.7 120 46.7
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 1.4e-11 73.2 120 45.8
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.4e-11 73.2 118 45.8
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 1.4e-11 73.2 119 47.1
Haze_26385 Corylus avellana HOM05D002502 ORTHO05D003592 1.4e-11 73.2 80 60.0
BcaC05g24905 Brassica carinata HOM05D002502 ORTHO05D003592 1.9e-11 72.8 81 55.6
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 2.5e-11 72.4 118 45.8
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 5.5e-11 71.2 81 59.3
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 5.5e-11 71.2 114 44.7
PRCOL_00004008 Prasinoderma coloniale HOM05D002502 ORTHO05D003592 7.2e-11 70.9 83 50.6
THA.LOC104824560 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 7.2e-11 70.9 81 55.6
Cre10.g459500 Chlamydomonas reinhardtii HOM05D002502 ORTHO05D003592 1.2e-10 70.1 81 53.1
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.8e-09 66.2 118 44.1
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 6.7e-09 64.3 111 48.6
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 3.3e-08 62.0 111 47.7
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 3.3e-08 62.0 105 41.9
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 5.7e-08 61.2 129 38.8
RcHm_v2.0_Chr5g0051911 Rosa chinensis HOM05D002502 ORTHO05D003592 7.4e-08 60.8 111 49.5
Cfa022185 Carpinus fangiana HOM05D002502 ORTHO05D003592 3.1e-06 55.5 81 42.0


User provided reference genes

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