Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21475 Trifolium pratense HOM05D002990 ORTHO05D411773 1.4e-29 132.1 61 100.0
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 1.1e-16 89.4 45 97.8
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 9.0e-16 86.3 45 91.1
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 1.2e-15 85.9 45 91.1
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 1.5e-15 85.5 45 91.1
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 1.5e-15 85.5 45 91.1
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 1.5e-15 85.5 45 91.1
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 2.0e-15 85.1 45 91.1
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 2.0e-15 85.1 45 91.1
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 88.9
MELO3C007300.2 Cucumis melo HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 3.4e-15 84.3 45 91.1
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 4.5e-15 84.0 45 91.1
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 4.5e-15 84.0 46 87.0
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 4.5e-15 84.0 45 88.9
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 4.5e-15 84.0 45 91.1
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 4.5e-15 84.0 45 88.9
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 5.9e-15 83.6 45 88.9
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 5.9e-15 83.6 45 88.9
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 5.9e-15 83.6 45 88.9
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 5.9e-15 83.6 45 91.1
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 7.7e-15 83.2 45 88.9
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 7.7e-15 83.2 45 86.7
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 1.3e-14 82.4 45 88.9
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 1.3e-14 82.4 45 88.9
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 1.3e-14 82.4 45 86.7
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 1.3e-14 82.4 45 86.7
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 1.7e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 1.7e-14 82.0 45 84.4
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 1.7e-14 82.0 45 88.9
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 1.7e-14 82.0 45 88.9
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 2.2e-14 81.6 45 86.7
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 2.2e-14 81.6 45 88.9
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 2.2e-14 81.6 45 88.9
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 2.2e-14 81.6 45 88.9
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 2.9e-14 81.3 45 84.4
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 2.9e-14 81.3 45 86.7
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 3.8e-14 80.9 45 88.9
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 3.8e-14 80.9 45 82.2
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 3.8e-14 80.9 45 88.9
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 5.0e-14 80.5 45 86.7
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 5.0e-14 80.5 45 84.4
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 5.0e-14 80.5 45 84.4
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 5.0e-14 80.5 45 88.9
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 6.5e-14 80.1 45 88.9
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 6.5e-14 80.1 45 82.2
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 6.5e-14 80.1 45 86.7
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 8.5e-14 79.7 45 86.7
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 8.5e-14 79.7 45 84.4
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 8.5e-14 79.7 45 86.7
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 8.5e-14 79.7 45 86.7
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 8.5e-14 79.7 45 86.7
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 84.4
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 1.1e-13 79.3 45 86.7
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 1.4e-13 79.0 45 86.7
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 1.4e-13 79.0 45 82.2
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 1.4e-13 79.0 45 82.2
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 1.4e-13 79.0 45 82.2
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 1.4e-13 79.0 45 82.2
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 84.4
Dinv29598 Davidia involucrata HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 84.4
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 80.0
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 82.2
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 84.4
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 84.4
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.9e-13 78.6 45 84.4
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 2.5e-13 78.2 45 82.2
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 2.5e-13 78.2 45 80.0
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 2.5e-13 78.2 45 80.0
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 2.5e-13 78.2 45 86.7
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 2.5e-13 78.2 45 84.4
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 86.7
DCAR_001749 Daucus carota HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 86.7
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 3.2e-13 77.8 45 82.2
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 84.4
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 84.4
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 84.4
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 84.4
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 77.8
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 4.2e-13 77.4 45 77.8
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 80.0
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 82.2
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 82.2
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 82.2
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 82.2
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 82.2
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 84.4
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 84.4
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 84.4
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 5.5e-13 77.0 45 84.4
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 82.2
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 82.2
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 80.0
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 82.2
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 80.0
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 7.2e-13 76.6 45 84.4
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 9.4e-13 76.3 45 82.2
Ciclev10014709m.g Citrus clementina HOM05D002990 ORTHO05D003954 9.4e-13 76.3 45 80.0
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 9.4e-13 76.3 45 77.8
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 1.2e-12 75.9 45 77.8
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 1.2e-12 75.9 45 82.2
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.2e-12 75.9 45 80.0
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 1.6e-12 75.5 45 77.8
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 77.8
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 82.2
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 77.8
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 80.0
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 75.6
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 2.1e-12 75.1 45 77.8
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 2.7e-12 74.7 45 75.6
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 2.7e-12 74.7 45 77.8
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 77.8
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 77.8
EL10Ac8g18392 Beta vulgaris HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 75.6
CARHR277810 Cardamine hirsuta HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 75.6
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 77.8
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 3.6e-12 74.3 45 77.8
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 4.6e-12 73.9 45 75.6
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 6.1e-12 73.6 45 75.6
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 7.9e-12 73.2 45 75.6
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 1.0e-11 72.8 45 75.6
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 1.4e-11 72.4 45 75.6
BcaC06g32216 Brassica carinata HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 73.3
A10p31110 Brassica napus HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 73.3
C09p71700 Brassica napus HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 73.3
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 73.3
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 73.3
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 75.6
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 1.8e-11 72.0 45 75.6
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 2.3e-11 71.6 45 75.6
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 2.3e-11 71.6 45 73.3
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 2.3e-11 71.6 45 71.1
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 2.3e-11 71.6 45 71.1
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 2.3e-11 71.6 43 79.1
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 73.3
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 73.3
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 73.3
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 73.3
CARHR208250 Cardamine hirsuta HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 73.3
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 77.8
AUR62011579 Chenopodium quinoa HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 75.6
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 3.0e-11 71.2 45 75.6
BcaB05g21739 Brassica carinata HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 71.1
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 71.1
C02p02130 Brassica napus HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 71.1
BolC2t06181H Brassica oleracea HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 71.1
BraA02t04830Z Brassica rapa HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 71.1
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.9e-11 70.9 45 68.9
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 6.7e-11 70.1 45 71.1
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 1.1e-10 69.3 45 66.7
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 2.0e-10 68.6 45 66.7
AUR62002361 Chenopodium quinoa HOM05D002990 ORTHO05D003954 3.3e-10 67.8 45 73.3
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 3.3e-10 67.8 45 73.3
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 4.4e-10 67.4 45 68.9
Oeu000139.1 Olea europaea HOM05D002990 ORTHO05D003954 4.4e-10 67.4 61 60.7
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 5.7e-10 67.0 45 64.4
Eucgr.E04293 Eucalyptus grandis HOM05D002990 ORTHO05D003954 2.8e-09 64.7 44 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2368 Anthoceros agrestis HOM05D002990 ORTHO05D003954 3.7e-09 64.3 45 60.0
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 2.4e-08 61.6 45 60.0
SMO134G0021 Selaginella moellendorffii HOM05D002990 ORTHO05D003954 3.4e-07 57.8 45 55.6
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 4.5e-07 57.4 45 55.6
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 7.7e-07 56.6 45 53.3
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.7e-06 55.5 45 53.3
Cre02.g089100 Chlamydomonas reinhardtii HOM05D002990 ORTHO05D003954 5.0e-06 53.9 44 52.3


User provided reference genes

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