Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 0.0e+00 1172.9 568 100.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 0.0e+00 1138.6 568 96.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 6.5e-310 1066.6 568 89.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 4.2e-309 1063.9 568 88.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.6e-308 1062.0 570 89.1
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-308 1061.6 568 88.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-308 1061.6 568 88.6
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 6.1e-308 1060.1 568 88.6
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.8e-307 1058.5 568 88.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.5e-306 1053.1 568 87.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.8e-304 1048.5 568 87.7
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 7.3e-301 1036.6 569 86.8
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 6.1e-300 1033.5 566 86.9
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-298 1029.2 551 88.9
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 9.8e-298 1026.2 568 85.4
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.9e-297 1024.6 566 85.5
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.9e-297 1023.8 571 85.8
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.9e-297 1023.8 566 85.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.8e-296 1021.9 566 84.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 5.4e-296 1020.4 563 86.0
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 9.2e-296 1019.6 568 84.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-295 1019.2 569 84.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.0e-295 1018.5 563 85.8
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 569 84.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 563 85.8
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 5.9e-295 1016.9 566 85.9
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 569 84.4
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 558 86.4
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.0e-294 1016.1 569 84.5
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.3e-294 1015.8 570 85.6
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.7e-294 1015.4 567 85.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.9e-293 1011.9 570 83.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 573 84.3
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 3.6e-292 1007.7 552 85.7
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.6e-292 1007.7 561 84.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 3.1e-291 1004.6 592 81.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 6.8e-291 1003.4 555 84.7
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 8.9e-291 1003.0 568 84.0
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 8.9e-291 1003.0 571 83.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 549 85.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 564 83.9
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 571 84.4
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 4.4e-290 1000.7 569 83.3
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.8e-290 1000.3 549 84.9
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 9.8e-290 999.6 547 86.3
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.8e-290 999.6 549 85.1
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.7e-289 998.8 549 84.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.9e-289 998.0 549 85.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 8.3e-289 996.5 549 85.6
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.9e-288 995.3 573 82.7
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.4e-288 995.0 564 83.9
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 5.4e-288 993.8 566 82.0
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.6e-287 992.3 569 83.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.6e-287 992.3 549 84.7
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.3e-286 989.2 569 86.3
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.3e-286 989.2 569 82.4
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.7e-286 988.8 594 79.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.3e-286 988.4 574 81.9
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.0e-286 988.0 568 81.9
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 6.6e-286 986.9 547 85.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 8.6e-286 986.5 568 81.9
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 5.6e-285 983.8 568 81.9
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 7.3e-285 983.4 568 81.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 7.3e-285 983.4 565 82.5
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 9.5e-285 983.0 568 82.7
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.1e-284 981.9 568 81.5
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 3.6e-284 981.1 556 84.4
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.7e-284 980.7 568 81.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.1e-283 979.5 568 81.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.1e-283 979.5 560 83.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.1e-283 978.0 552 83.7
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 6.8e-283 976.9 570 81.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.5e-282 975.7 568 80.5
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.4e-282 974.5 566 82.2
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 5.8e-282 973.8 566 82.0
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.9e-281 970.7 549 82.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 2.4e-280 968.4 568 80.6
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 3.2e-280 968.0 553 81.7
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.3e-278 962.6 550 83.6
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 3.3e-277 958.0 576 79.2
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.3e-277 956.8 555 81.3
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.1e-276 955.3 568 79.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.6e-276 954.5 568 78.9
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.6e-276 954.5 567 78.8
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 5.2e-275 950.7 561 79.7
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 6.8e-275 950.3 547 83.9
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.4e-274 948.0 555 81.3
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 3.4e-274 948.0 561 79.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 4.4e-274 947.6 552 80.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 7.6e-274 946.8 567 78.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.5e-269 931.8 553 79.9
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.3e-269 931.4 569 80.3
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.6e-268 929.1 529 84.5
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.2e-268 927.2 573 77.7
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.1e-268 926.8 543 81.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 4.0e-267 924.5 551 80.2
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 8.1e-260 900.2 568 77.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.3e-254 882.1 542 75.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 8.1e-252 873.6 544 75.2
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 3.1e-251 871.7 568 73.9
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.0e-251 870.2 540 75.9
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-250 869.4 540 75.7
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 4.5e-250 867.8 497 81.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.1e-248 863.2 550 74.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.2e-248 861.3 543 74.8
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.0e-247 857.4 559 74.6
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 8.4e-241 837.0 566 74.0
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 8.4e-241 837.0 551 72.6
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.9e-240 835.9 560 74.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 6.0e-239 830.9 548 72.1
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 4.1e-235 818.1 455 86.8
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.5e-232 808.9 506 76.9
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 3.9e-230 801.6 549 70.3
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 5.9e-226 787.7 423 89.1
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 9.4e-224 780.4 555 67.2
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 6.7e-222 774.2 424 87.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.4e-219 766.5 540 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.2e-216 755.4 536 66.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 7.4e-213 744.2 546 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 8.5e-209 730.7 540 63.9
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.3e-206 722.6 533 67.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.3e-206 722.6 533 67.4
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 8.0e-199 697.6 610 60.8
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.5e-181 640.2 330 94.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.5e-173 611.3 334 87.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 3.5e-162 575.9 568 56.2
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-152 543.5 292 88.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.0e-146 521.9 546 49.8
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.6e-143 513.8 279 88.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.3e-129 467.6 309 73.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.1e-123 448.0 351 65.8
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.2e-101 374.8 199 89.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.4e-88 329.7 500 42.6
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 5.7e-72 276.2 205 64.4
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.2e-70 270.4 341 44.3
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 5.4e-62 243.0 139 83.5
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 9.2e-62 242.3 133 85.7
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-59 234.6 130 83.1
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.3e-57 227.6 131 83.2
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.3e-52 211.8 129 76.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.1e-51 208.8 137 73.0
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.1e-49 202.2 109 79.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 4.0e-49 200.3 127 74.8
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 4.0e-49 200.3 127 74.8
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 8.3e-47 192.6 120 73.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 8.3e-47 192.6 120 73.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.0e-44 185.7 119 73.9
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.0e-44 185.7 119 73.9
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-44 184.9 119 74.8
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.5e-43 181.0 95 84.2
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.3e-34 152.1 79 93.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.8e-34 151.0 76 86.8
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 4.8e-26 123.6 118 50.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.6e-24 117.9 102 59.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 7.6e-24 116.3 60 88.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 2.2e-23 114.8 214 39.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.7e-21 107.8 121 46.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.9e-14 85.1 53 75.5


User provided reference genes

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