Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 0.0e+00 1921.4 1182 100.0
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.1e-241 840.1 599 84.6
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.3e-187 660.6 423 77.1
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 8.6e-187 658.7 1054 38.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.2e-173 613.6 424 71.9
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 3.1e-168 597.0 427 70.0
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 3.9e-155 553.5 430 65.1
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 4.0e-152 543.5 395 67.8
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 6.8e-152 542.7 426 64.6
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.0e-147 528.9 393 65.6
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 3.9e-147 526.9 400 65.0
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.3e-144 516.5 433 59.8
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 3.8e-142 510.4 412 62.6
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 2.3e-139 501.1 358 67.0
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.1e-138 498.8 393 62.6
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 1.5e-138 498.4 393 62.8
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 8.1e-137 492.7 389 63.0
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.4e-136 491.9 417 60.0
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 5.4e-133 479.9 361 62.9
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 1.5e-130 471.9 354 62.1
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 6.2e-129 466.5 356 62.1
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 8.1e-129 466.1 356 62.1
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.5e-127 461.8 391 57.3
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.6e-127 461.1 347 62.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.3e-126 458.8 354 62.7
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 2.9e-126 457.6 350 61.1
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.9e-125 454.9 357 60.5
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.5e-125 454.5 378 58.2
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.2e-125 454.1 359 61.3
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 2.7e-124 451.1 342 60.8
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.6e-124 450.3 348 59.5
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.0e-123 449.1 347 61.4
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.8e-123 448.4 360 59.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.3e-123 448.0 358 60.3
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.9e-123 447.2 348 59.5
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 6.7e-123 446.4 378 56.6
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 8.7e-123 446.0 348 59.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.9e-122 444.9 348 59.8
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.7e-122 443.4 348 58.6
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 9.6e-122 442.6 366 56.0
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.8e-121 441.0 310 67.4
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.8e-121 441.0 310 68.1
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.8e-121 441.0 384 55.5
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 6.2e-121 439.9 360 57.5
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 8.2e-121 439.5 349 57.6
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.4e-120 438.7 362 59.4
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 2.0e-119 434.9 427 54.3
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.6e-119 434.5 390 55.9
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 3.4e-119 434.1 316 62.7
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 5.8e-119 433.3 406 55.7
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 7.6e-119 433.0 361 56.5
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.0e-118 432.6 452 51.5
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.4e-117 428.7 353 57.8
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.5e-117 427.9 360 56.7
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.6e-116 425.2 335 57.6
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.6e-116 425.2 316 63.0
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.5e-116 424.1 441 49.4
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.1e-116 423.3 312 61.9
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 3.0e-115 421.0 347 55.9
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 5.1e-115 420.2 390 54.9
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.1e-114 419.1 402 53.0
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.1e-114 419.1 364 53.0
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.3e-114 417.2 342 57.6
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 5.7e-114 416.8 341 56.6
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 5.7e-114 416.8 341 58.1
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 5.7e-114 416.8 456 47.8
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.7e-114 416.0 359 55.7
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 4.8e-113 413.7 307 60.9
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 6.3e-113 413.3 424 49.5
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 2.4e-112 411.4 297 63.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 3.1e-112 411.0 344 54.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 6.9e-112 409.8 344 55.8
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.7e-110 405.2 356 55.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.9e-109 401.7 437 47.6
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 9.4e-109 399.4 371 51.5
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 4.6e-108 397.1 349 54.2
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 2.3e-107 394.8 370 53.8
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.5e-106 392.1 338 54.4
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.0e-106 391.7 358 54.2
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 4.3e-106 390.6 361 52.9
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.4e-104 384.8 436 47.0
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.1e-104 384.4 341 52.8
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 4.1e-104 384.0 430 46.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 5.3e-104 383.6 418 46.4
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.5e-103 382.1 436 46.8
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 3.4e-103 380.9 421 47.5
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.5e-103 380.6 350 50.6
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 5.0e-102 377.1 421 47.3
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 6.5e-102 376.7 327 53.8
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 8.5e-102 376.3 338 51.5
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.9e-101 375.2 365 50.4
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 9.4e-101 372.9 347 50.4
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.1e-100 371.7 370 49.2
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.7e-100 371.3 342 52.0
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.4e-99 369.0 325 53.2
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 3.9e-99 367.5 270 61.1
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 6.7e-99 366.7 371 49.6
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.0e-98 365.2 342 51.8
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.0e-98 365.2 377 46.9
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.6e-98 364.8 377 46.9
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.7e-97 362.1 250 66.4
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.7e-97 360.9 349 51.6
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.2e-97 359.8 369 47.4
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 1.4e-96 359.0 371 50.4
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.5e-95 355.5 419 46.5
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.6e-95 354.8 369 47.7
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.9e-94 351.3 437 44.2
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 6.5e-94 350.1 355 47.9
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.1e-93 349.4 342 51.2
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 1.1e-93 349.4 351 49.3
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-93 349.0 429 43.6
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 3.2e-93 347.8 443 43.1
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.5e-93 347.1 371 48.0
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.7e-92 344.7 410 45.4
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 6.1e-92 343.6 477 40.0
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 8.0e-92 343.2 391 44.2
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 8.0e-92 343.2 413 45.5
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 2.0e-90 338.6 446 42.2
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.6e-90 338.2 338 49.7
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 5.7e-90 337.0 404 45.0
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 7.4e-90 336.7 433 43.4
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.7e-89 335.5 412 44.7
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.4e-88 331.6 412 44.2
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.4e-88 331.6 344 47.4
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.2e-87 329.3 346 47.7
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.6e-87 328.9 344 47.1
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 3.5e-87 327.8 403 43.7
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-86 326.2 344 46.8
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 6.5e-86 323.6 285 50.9
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.5e-85 321.6 423 42.6
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.1e-84 318.5 419 41.5
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 9.8e-82 309.7 354 44.9
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.3e-81 309.3 368 42.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.1e-80 306.2 283 52.3
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.4e-80 305.8 272 51.8
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 3.1e-80 304.7 419 40.8
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 5.4e-80 303.9 226 60.6
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.2e-76 292.7 338 42.9
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.8e-75 286.6 343 42.6
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.4e-72 278.5 326 41.4
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.6e-71 275.8 322 42.5
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 9.8e-66 256.5 332 38.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.0e-63 248.8 283 44.5
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.5e-63 248.1 341 38.7
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 7.8e-63 246.9 324 40.1
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.0e-62 246.5 341 38.1
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.9e-62 245.0 341 38.4
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.0e-59 236.5 314 38.5
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.4e-58 231.1 215 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 6.4e-57 227.3 355 34.6
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 6.6e-54 217.2 291 39.2
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 8.6e-54 216.9 321 33.0
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 5.6e-53 214.2 191 53.4
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 6.2e-52 210.7 270 38.5
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.9e-51 206.8 191 46.6
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.6e-50 205.3 192 48.4
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 6.4e-49 200.7 284 36.6
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.1e-48 199.9 303 35.6
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.1e-48 199.9 303 35.6
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 4.4e-42 177.9 142 61.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.4e-41 173.7 175 48.6
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.6e-37 161.0 134 50.7
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.2e-34 153.3 162 48.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.9e-33 148.7 118 61.0
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.1e-30 137.9 111 58.6
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 8.7e-30 137.1 208 38.5
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.8e-26 124.4 229 31.9
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.9e-25 121.3 87 62.1
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.7e-22 112.8 167 30.5
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 8.1e-20 104.0 85 54.1
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 2.0e-18 99.4 195 29.7
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.9e-17 94.7 91 46.2
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 6.4e-17 94.4 90 50.0
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 3.3e-13 82.0 61 63.9
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 1.5e-10 73.2 185 27.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.6e-07 61.6 101 35.6


User provided reference genes

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