Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20926 Trifolium pratense HOM05D000068 ORTHO05D008004 6.2e-70 267.3 131 100.0
Psat1g105160 Pisum sativum HOM05D000068 ORTHO05D008004 4.3e-39 164.9 137 69.3
Medtr6g465300 Medicago truncatula HOM05D000068 ORTHO05D008004 8.4e-35 150.6 132 66.7
Ca_26265_v3 Cicer arietinum L. HOM05D000068 ORTHO05D008004 3.8e-27 125.2 80 76.2
Lj2g0015007 Lotus japonicus HOM05D000068 ORTHO05D008004 1.1e-26 123.6 134 56.7
VMungo0464G1471 Vigna mungo HOM05D000068 ORTHO05D008004 9.6e-23 110.5 135 55.6
Glyma.09G147400 Glycine max HOM05D000068 ORTHO05D008004 1.2e-20 103.6 120 56.7
Phvul.004G122300 Phaseolus vulgaris HOM05D000068 ORTHO05D008004 5.8e-20 101.3 136 52.9
Lalb_Chr03g0034221 Lupinus albus HOM05D000068 ORTHO05D008004 8.4e-19 97.4 132 49.2
arahy.Tifrunner.gnm1.ann1.4DG32P Arachis hypogaea HOM05D000068 ORTHO05D008004 3.0e-16 89.0 121 47.9
arahy.Tifrunner.gnm1.ann1.9PJ8QM Arachis hypogaea HOM05D000068 ORTHO05D008004 3.9e-16 88.6 130 44.6
Hund04697 Selenicereus undatus HOM05D000068 ORTHO05D008004 1.3e-14 83.6 132 44.7
Sabra15G0148400 Salix brachista HOM05D000068 ORTHO05D008004 6.3e-14 81.3 137 41.6
Prupe.2G289200 Prunus persica HOM05D000068 ORTHO05D008004 8.2e-14 80.9 107 50.5
Haze_13771 Corylus avellana HOM05D000068 ORTHO05D008004 1.8e-13 79.7 132 44.7
vmacro06750 Vaccinium macrocarpon HOM05D000068 ORTHO05D008004 1.8e-13 79.7 132 43.2
Potri.015G136700 Populus trichocarpa HOM05D000068 ORTHO05D008004 3.1e-13 79.0 117 44.4
ClCG01G005380 Citrullus lanatus HOM05D000068 ORTHO05D008004 4.1e-13 78.6 117 43.6
Ciclev10004389m.g Citrus clementina HOM05D000068 ORTHO05D008004 6.9e-13 77.8 101 45.5
Dinv35171 Davidia involucrata HOM05D000068 ORTHO05D008004 9.0e-13 77.4 72 55.6
MD07G1262600 Malus domestica HOM05D000068 ORTHO05D008004 9.0e-13 77.4 91 50.5
Sed0012146 Sechium edule HOM05D000068 ORTHO05D008004 1.2e-12 77.0 98 51.0
QL09p015467 Quercus lobata HOM05D000068 ORTHO05D008004 1.5e-12 76.6 108 45.4
FvH4_7g28920 Fragaria vesca HOM05D000068 ORTHO05D008004 3.4e-12 75.5 73 56.2
FAN06G0981 Fragaria x ananassa HOM05D000068 ORTHO05D008004 3.4e-12 75.5 73 56.2
FAN06G1335 Fragaria x ananassa HOM05D000068 ORTHO05D008004 3.4e-12 75.5 73 56.2
PGR042G3668 Punica granatum HOM05D000068 ORTHO05D008004 4.5e-12 75.1 70 55.7
TWI23G1186 Tripterygium wilfordii HOM05D000068 ORTHO05D008004 4.5e-12 75.1 139 38.8
Actinidia34073 Actinidia chinensis HOM05D000068 ORTHO05D008004 7.6e-12 74.3 142 40.8
FAN03G2985 Fragaria x ananassa HOM05D000068 ORTHO05D008004 1.0e-11 73.9 73 54.8
Hma1.2p1_0270F.1_g108530 Hydrangea macrophylla HOM05D000068 ORTHO05D008004 2.2e-11 72.8 72 54.2
Rhsim03G0176200 Rhododendron simsii HOM05D000068 ORTHO05D008004 2.2e-11 72.8 128 42.2
RcHm_v2.0_Chr1g0376591 Rosa chinensis HOM05D000068 ORTHO05D008004 3.8e-11 72.0 70 55.7
GSVIVG01010634001 Vitis vinifera HOM05D000068 ORTHO05D008004 6.5e-11 71.2 144 40.3
FAN01G0643 Fragaria x ananassa HOM05D000068 ORTHO05D008004 8.4e-11 70.9 73 53.4
Ah.13g067960 Amaranthus hybridus HOM05D001521 ORTHO05D001342 1.1e-10 70.5 70 51.4
Migut.F00384 Erythranthe guttata HOM05D000068 ORTHO05D008004 1.1e-10 70.5 71 52.1
EL10Ac3g05681 Beta vulgaris HOM05D000068 ORTHO05D008004 1.4e-10 70.1 125 40.0
CiPaw.04G068300 Carya illinoinensis HOM05D000068 ORTHO05D008004 1.4e-10 70.1 134 38.1
Actinidia32904 Actinidia chinensis HOM05D000068 ORTHO05D008004 1.9e-10 69.7 126 42.1
Gohir.A08G094300 Gossypium hirsutum HOM05D000068 ORTHO05D008004 1.9e-10 69.7 123 41.5
Aqoxy7G00466 Aquilegia oxysepala HOM05D000068 ORTHO05D008004 2.5e-10 69.3 135 38.5
Nn1g01334 Nelumbo nucifera HOM05D000068 ORTHO05D008004 2.5e-10 69.3 136 38.2
Sed0022360 Sechium edule HOM05D000068 ORTHO05D008004 3.2e-10 68.9 119 38.7
Gorai.004G111900 Gossypium raimondii HOM05D000068 ORTHO05D008004 4.2e-10 68.6 112 44.6
SalBow4G2416 Salvia bowleyana HOM05D000068 ORTHO05D008004 5.5e-10 68.2 134 36.6
Atru.chr1.535 Acer truncatum HOM05D000068 ORTHO05D008004 7.2e-10 67.8 127 42.5
CsaV3_5G005630 Cucumis sativus L. HOM05D000068 ORTHO05D008004 9.3e-10 67.4 99 44.4
Gohir.D08G104800 Gossypium hirsutum HOM05D000068 ORTHO05D008004 1.2e-09 67.0 112 43.8
Sc13g0008410 Simmondsia chinensis HOM05D000068 ORTHO05D008004 2.1e-09 66.2 104 42.3
AUR62021245 Chenopodium quinoa HOM05D000068 ORTHO05D008004 2.7e-09 65.9 133 40.6
AT4G25450 Arabidopsis thaliana HOM05D000068 ORTHO05D008004 3.5e-09 65.5 71 50.7
Thecc.03G169600 Theobroma cacao HOM05D000068 ORTHO05D008004 3.5e-09 65.5 140 42.1
MSTRG.27140 Avicennia marina HOM05D000068 ORTHO05D008004 4.6e-09 65.1 125 37.6
CSS0031874 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 4.6e-09 65.1 75 49.3
CSS0037171 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 4.6e-09 65.1 75 49.3
Manes.06G142900 Manihot esculenta HOM05D000068 ORTHO05D008004 4.6e-09 65.1 73 50.7
Cpa.g.sc107.1 Carica papaya HOM05D000068 ORTHO05D008004 6.1e-09 64.7 72 50.0
COL.COLO4_14251 Corchorus olitorius HOM05D000068 ORTHO05D008004 6.1e-09 64.7 139 41.0
Lj1A990G57 Lonicera japonica HOM05D000068 ORTHO05D008004 7.9e-09 64.3 126 42.9
Sp7g23500 Schrenkiella parvula HOM05D000068 ORTHO05D008004 7.9e-09 64.3 137 38.0
Aa31sc521G30 Aethionema arabicum HOM05D000068 ORTHO05D008004 1.0e-08 63.9 87 47.1
AL7G27640 Arabidopsis lyrata HOM05D000068 ORTHO05D008004 1.0e-08 63.9 71 49.3
Zm00001eb306760 Zea mays HOM05D000068 ORTHO05D008004 1.0e-08 63.9 124 36.3
BcaB03g12468 Brassica carinata HOM05D000068 ORTHO05D008004 1.3e-08 63.5 142 38.7
BcaC07g38190 Brassica carinata HOM05D000068 ORTHO05D008004 1.8e-08 63.2 73 49.3
A08p21170 Brassica napus HOM05D000068 ORTHO05D008004 1.8e-08 63.2 73 49.3
BolC8t48610H Brassica oleracea HOM05D000068 ORTHO05D008004 1.8e-08 63.2 73 49.3
BraA08t34066Z Brassica rapa HOM05D000068 ORTHO05D008004 1.8e-08 63.2 73 49.3
Duzib084G1174 Durio zibethinus HOM05D000068 ORTHO05D008004 2.3e-08 62.8 112 43.8
CANSAT21G0450 Cannabis sativa HOM05D000068 ORTHO05D008004 3.0e-08 62.4 127 36.2
Carub.0007s1553 Capsella rubella HOM05D000068 ORTHO05D008004 3.0e-08 62.4 136 39.7
DCAR_018154 Daucus carota HOM05D000068 ORTHO05D008004 3.0e-08 62.4 115 40.0
PSO478G3760 Papaver somniferum HOM05D000068 ORTHO05D008004 3.0e-08 62.4 142 36.6
THA.LOC104798735 Tarenaya hassleriana HOM05D000068 ORTHO05D008004 3.9e-08 62.0 73 46.6
CARHR232880 Cardamine hirsuta HOM05D000068 ORTHO05D008004 5.1e-08 61.6 73 49.3
HanXRQChr15g0486321 Helianthus annuus HOM05D000068 ORTHO05D008004 5.1e-08 61.6 72 50.0
ECA232G0015 Erigeron canadensis HOM05D000068 ORTHO05D008004 6.7e-08 61.2 73 46.6
Thhalv10024541m.g Eutrema salsugineum HOM05D000068 ORTHO05D008004 6.7e-08 61.2 73 47.9
Nitab4.5_0008764g0030 Nicotiana tabacum HOM05D000068 ORTHO05D008004 1.1e-07 60.5 92 42.4
Peaxi162Scf00648g00223 Petunia axillaris HOM05D000068 ORTHO05D008004 1.9e-07 59.7 125 38.4
SGA_v2.0_scaffold2G01086 Striga asiatica HOM05D000068 ORTHO05D008004 3.3e-07 58.9 124 35.5
Os07g0464600 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D008004 4.3e-07 58.5 107 42.1
PGSC0003DMG400014306 Solanum tuberosum HOM05D000068 ORTHO05D008004 1.3e-06 57.0 138 34.8
CAN.G548.19 Capsicum annuum HOM05D000068 ORTHO05D008004 1.6e-06 56.6 141 33.3
Nitab4.5_0000832g0200 Nicotiana tabacum HOM05D000068 ORTHO05D008004 1.6e-06 56.6 117 36.8
Lsat_1_v5_gn_9_53861 Lactuca sativa HOM05D000068 ORTHO05D008004 2.8e-06 55.8 126 36.5
Solyc03g026310.4 Solanum lycopersicum HOM05D000068 ORTHO05D008004 2.8e-06 55.8 74 43.2
Dinv28495 Davidia involucrata HOM05D000068 ORTHO05D008004 3.7e-06 55.5 66 45.5
CSS0023345 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 4.8e-06 55.1 66 50.0
CSS0038988 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 4.8e-06 55.1 66 50.0
Oeu047984.1 Olea europaea HOM05D000068 ORTHO05D008004 6.3e-06 54.7 127 35.4
Sopen03g005200 Solanum pennellii HOM05D000068 ORTHO05D008004 6.3e-06 54.7 125 35.2
PSO782G0014 Papaver somniferum HOM05D000068 ORTHO05D008004 8.2e-06 54.3 41 61.0


User provided reference genes

Program Settings