Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20916 Trifolium pratense HOM05D001068 ORTHO05D030031 2.0e-25 118.2 58 100.0
TPR.G18112 Trifolium pratense HOM05D001068 ORTHO05D003875 5.2e-21 103.6 52 94.2
TPR.G18124 Trifolium pratense HOM05D001068 ORTHO05D003875 5.4e-18 93.6 47 95.7
VMungo1215G1615 Vigna mungo HOM05D001068 ORTHO05D003875 7.8e-17 89.7 48 87.5
Medtr5g012920 Medicago truncatula HOM05D001068 ORTHO05D003875 1.0e-16 89.4 46 91.3
Phvul.002G056700 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 8.6e-16 86.3 47 85.1
Glyma.11G035200 Glycine max HOM05D001068 ORTHO05D003875 2.5e-15 84.7 45 86.7
Ca_24593_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 3.3e-15 84.3 46 89.1
Lj2g0000811 Lotus japonicus HOM05D001068 ORTHO05D003875 4.3e-15 84.0 44 88.6
MELO3C005515.2 Cucumis melo HOM05D001068 ORTHO05D003875 1.2e-14 82.4 46 82.6
Carub.0007s2462 Capsella rubella HOM05D001068 ORTHO05D003875 1.6e-14 82.0 47 80.9
ClCG01G004240 Citrullus lanatus HOM05D001068 ORTHO05D003875 2.8e-14 81.3 46 80.4
Glyma.01G207500 Glycine max HOM05D001068 ORTHO05D003875 2.8e-14 81.3 45 82.2
Lalb_Chr05g0214351 Lupinus albus HOM05D001068 ORTHO05D003875 3.6e-14 80.9 47 83.0
Psat2g176520 Pisum sativum HOM05D001068 ORTHO05D003875 4.7e-14 80.5 47 80.9
A03p19670 Brassica napus HOM05D001068 ORTHO05D003875 6.2e-14 80.1 47 78.7
CANSAT21G1427 Cannabis sativa HOM05D001068 ORTHO05D003875 6.2e-14 80.1 47 78.7
CsaV3_5G004440 Cucumis sativus L. HOM05D001068 ORTHO05D003875 6.2e-14 80.1 46 78.3
Thhalv10024621m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 6.2e-14 80.1 47 80.9
AT4G16760 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 8.1e-14 79.7 47 78.7
THA.LOC104815504 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.4e-13 79.0 46 80.4
TPR.G37610 Trifolium pratense HOM05D001068 ORTHO05D003875 1.4e-13 79.0 46 80.4
AL7G37930 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 1.8e-13 78.6 47 78.7
BcaNung00152 Brassica carinata HOM05D001068 ORTHO05D003875 1.8e-13 78.6 47 76.6
Manes.02G041600 Manihot esculenta HOM05D001068 ORTHO05D003875 2.3e-13 78.2 47 76.6
Actinidia14405 Actinidia chinensis HOM05D001068 ORTHO05D003875 3.1e-13 77.8 46 80.4
arahy.Tifrunner.gnm1.ann1.I9A8PV Arachis hypogaea HOM05D001068 ORTHO05D003875 3.1e-13 77.8 47 80.9
arahy.Tifrunner.gnm1.ann1.ZPM9RR Arachis hypogaea HOM05D001068 ORTHO05D003875 3.1e-13 77.8 47 80.9
Psat4g072960 Pisum sativum HOM05D001068 ORTHO05D003875 3.1e-13 77.8 46 80.4
BcaC09g50411 Brassica carinata HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 74.5
A01p20470 Brassica napus HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 74.5
C01p25740 Brassica napus HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 74.5
BolC1t02524H Brassica oleracea HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 74.5
BraA01t01975Z Brassica rapa HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 74.5
Thhalv10016360m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 78.7
Sp4g17950 Schrenkiella parvula HOM05D001068 ORTHO05D003875 4.0e-13 77.4 47 76.6
BcaC01g05713 Brassica carinata HOM05D001068 ORTHO05D003875 5.2e-13 77.0 47 76.6
C03p22930 Brassica napus HOM05D001068 ORTHO05D003875 5.2e-13 77.0 47 76.6
BolC3t14694H Brassica oleracea HOM05D001068 ORTHO05D003875 5.2e-13 77.0 47 76.6
Manes.01G083700 Manihot esculenta HOM05D001068 ORTHO05D003875 5.2e-13 77.0 47 76.6
Ca_21989_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 6.8e-13 76.6 46 78.3
Ca_30457_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 6.8e-13 76.6 46 78.3
Sabra01G0125000 Salix brachista HOM05D001068 ORTHO05D003875 6.8e-13 76.6 47 76.6
BraA03t11221Z Brassica rapa HOM05D001068 ORTHO05D003875 8.9e-13 76.3 47 76.6
PGR042G1327 Punica granatum HOM05D001068 ORTHO05D003875 8.9e-13 76.3 46 78.3
Sp7g17360 Schrenkiella parvula HOM05D001068 ORTHO05D003875 8.9e-13 76.3 47 76.6
THA.LOC104814467 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.5e-12 75.5 46 78.3
arahy.Tifrunner.gnm1.ann1.QXG3RX Arachis hypogaea HOM05D001068 ORTHO05D003875 2.0e-12 75.1 46 76.1
FvH4_5g19470 Fragaria vesca HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN04G2918 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN08G3629 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN13G2133 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN18G2254 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN18G3422 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
FAN18G4353 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 74.5
Lj4g0020838 Lotus japonicus HOM05D001068 ORTHO05D003875 2.0e-12 75.1 47 76.6
Nitab4.5_0003050g0030 Nicotiana tabacum HOM05D001068 ORTHO05D003875 2.0e-12 75.1 46 76.1
Lj8A269T38 Lonicera japonica HOM05D001068 ORTHO05D003875 2.6e-12 74.7 46 76.1
TWI15G0242 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 2.6e-12 74.7 48 79.2
vmacro00007 Vaccinium macrocarpon HOM05D001068 ORTHO05D003875 2.6e-12 74.7 46 76.1
CSS0023687 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 3.4e-12 74.3 46 73.9
CARHR223330 Cardamine hirsuta HOM05D001068 ORTHO05D003875 3.4e-12 74.3 47 72.3
Lalb_Chr05g0214321 Lupinus albus HOM05D001068 ORTHO05D030031 3.4e-12 74.3 52 71.2
MD04G1060500 Malus domestica HOM05D001068 ORTHO05D003875 3.4e-12 74.3 47 72.3
Aa31LG2G12940 Aethionema arabicum HOM05D001068 ORTHO05D003875 4.4e-12 73.9 47 72.3
arahy.Tifrunner.gnm1.ann1.MWEA9C Arachis hypogaea HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 73.9
Cfa012691 Carpinus fangiana HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 73.9
Haze_07942 Corylus avellana HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 73.9
Medtr4g100640 Medicago truncatula HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 76.1
Peaxi162Scf00214g00048 Petunia axillaris HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 73.9
Prupe.5G065100 Prunus persica HOM05D001068 ORTHO05D003875 4.4e-12 73.9 47 72.3
Sed0012317 Sechium edule HOM05D001068 ORTHO05D003875 4.4e-12 73.9 46 73.9
Cpa.g.sc89.71 Carica papaya HOM05D001068 ORTHO05D003875 5.8e-12 73.6 46 76.1
Nitab4.5_0001381g0040 Nicotiana tabacum HOM05D001068 ORTHO05D003875 5.8e-12 73.6 46 73.9
Potri.001G155500 Populus trichocarpa HOM05D001068 ORTHO05D003875 5.8e-12 73.6 46 73.9
RcHm_v2.0_Chr7g0204041 Rosa chinensis HOM05D001068 ORTHO05D003875 5.8e-12 73.6 47 72.3
BolC6t35390H Brassica oleracea HOM05D001068 ORTHO05D003875 7.5e-12 73.2 45 75.6
Dinv39171 Davidia involucrata HOM05D001068 ORTHO05D003875 7.5e-12 73.2 47 74.5
Hma1.2p1_1136F.1_g260540 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 7.5e-12 73.2 46 73.9
SHI09357 Sapria himalayana HOM05D001068 ORTHO05D030031 7.5e-12 73.2 47 72.3
AL4G31770 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 9.8e-12 72.8 47 72.3
AL575U10010 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 9.8e-12 72.8 47 72.3
CAN.G1178.15 Capsicum annuum HOM05D001068 ORTHO05D003875 9.8e-12 72.8 46 71.7
Dinv21659 Davidia involucrata HOM05D001068 ORTHO05D003875 9.8e-12 72.8 46 76.1
Sabra01G0125200 Salix brachista HOM05D001068 ORTHO05D003875 9.8e-12 72.8 46 71.7
unitig_8.g3019 Utricularia gibba HOM05D001068 ORTHO05D003875 9.8e-12 72.8 47 74.5
Atru.chr9.1272 Acer truncatum HOM05D001068 ORTHO05D003875 1.3e-11 72.4 46 73.9
CiPaw.12G050100 Carya illinoinensis HOM05D001068 ORTHO05D003875 1.3e-11 72.4 46 73.9
THA.LOC104812770 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.3e-11 72.4 45 77.8
AT2G35690 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 1.7e-11 72.0 47 72.3
Glyma.05G062200 Glycine max HOM05D001068 ORTHO05D003875 1.7e-11 72.0 47 72.3
TAR629G1427 Trochodendron aralioides HOM05D001068 ORTHO05D003875 1.7e-11 72.0 46 78.3
Ciclev10019196m.g Citrus clementina HOM05D001068 ORTHO05D003875 2.2e-11 71.6 46 73.9
Cc08_g12140 Coffea canephora HOM05D001068 ORTHO05D003875 2.2e-11 71.6 46 71.7
Duzib084G1186 Durio zibethinus HOM05D001068 ORTHO05D003875 2.2e-11 71.6 47 70.2
Sopen08g026880 Solanum pennellii HOM05D001068 ORTHO05D003875 2.9e-11 71.2 46 71.7
PGSC0003DMG400004828 Solanum tuberosum HOM05D001068 ORTHO05D003875 2.9e-11 71.2 46 71.7
Sed0021431 Sechium edule HOM05D001068 ORTHO05D003875 3.7e-11 70.9 46 69.6
VMungo0251G0971 Vigna mungo HOM05D001068 ORTHO05D003875 3.7e-11 70.9 47 72.3
CSS0004981 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 4.9e-11 70.5 47 74.5
CSS0035524 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 4.9e-11 70.5 47 74.5
DCAR_008508 Daucus carota HOM05D001068 ORTHO05D003875 4.9e-11 70.5 49 67.3
Phvul.003G222800 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 4.9e-11 70.5 47 70.2
TWI81G0453 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 4.9e-11 70.5 44 75.0
DCAR_027764 Daucus carota HOM05D001068 ORTHO05D003875 6.4e-11 70.1 47 68.1
Nn6g33873 Nelumbo nucifera HOM05D001068 ORTHO05D003875 6.4e-11 70.1 47 70.2
QL12p011360 Quercus lobata HOM05D001068 ORTHO05D003875 6.4e-11 70.1 46 73.9
CSS0037699 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 8.3e-11 69.7 47 74.5
Hma1.2p1_0316F.1_g122820 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 8.3e-11 69.7 46 71.7
Gohir.A12G215400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.1e-10 69.3 50 62.0
BcaB01g03886 Brassica carinata HOM05D001068 ORTHO05D003875 1.9e-10 68.6 47 68.1
Gohir.A11G027400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.9e-10 68.6 47 66.0
Gohir.D11G026600 Gossypium hirsutum HOM05D001068 ORTHO05D003875 1.9e-10 68.6 47 66.0
Gorai.007G028900 Gossypium raimondii HOM05D001068 ORTHO05D003875 1.9e-10 68.6 47 66.0
Potri.003G079200 Populus trichocarpa HOM05D001068 ORTHO05D003875 1.9e-10 68.6 46 71.7
Carub.0004s1742 Capsella rubella HOM05D001068 ORTHO05D003875 3.2e-10 67.8 45 66.7
MD13G1127300 Malus domestica HOM05D001068 ORTHO05D003875 3.2e-10 67.8 50 64.0
CiPaw.11G081900 Carya illinoinensis HOM05D001068 ORTHO05D003875 4.1e-10 67.4 47 66.0
PSO063G6720 Papaver somniferum HOM05D001068 ORTHO05D003875 4.1e-10 67.4 46 69.6
Prupe.7G067100 Prunus persica HOM05D001068 ORTHO05D003875 4.1e-10 67.4 46 69.6
Thecc.03G247900 Theobroma cacao HOM05D001068 ORTHO05D003875 4.1e-10 67.4 47 66.0
Aqoxy3G02817 Aquilegia oxysepala HOM05D001068 ORTHO05D003875 5.4e-10 67.0 46 69.6
Gohir.D12G218000 Gossypium hirsutum HOM05D001068 ORTHO05D003875 5.4e-10 67.0 47 63.8
Gorai.008G233600 Gossypium raimondii HOM05D001068 ORTHO05D003875 5.4e-10 67.0 47 63.8
Lsat_1_v5_gn_6_18061 Lactuca sativa HOM05D001068 ORTHO05D003875 5.4e-10 67.0 49 59.2
Lalb_Chr05g0221141 Lupinus albus HOM05D001068 ORTHO05D003875 5.4e-10 67.0 44 70.5
Sabra03G0049400 Salix brachista HOM05D001068 ORTHO05D003875 5.4e-10 67.0 46 69.6
ATR0057G009 Amborella trichopoda HOM05D001068 ORTHO05D003875 7.1e-10 66.6 46 67.4
AUR62007112 Chenopodium quinoa HOM05D001068 ORTHO05D003875 7.1e-10 66.6 44 68.2
Duzib205G0096 Durio zibethinus HOM05D001068 ORTHO05D003875 7.1e-10 66.6 47 61.7
SalBow6G3759 Salvia bowleyana HOM05D001068 ORTHO05D003875 7.1e-10 66.6 46 67.4
Solyc08g078400.3 Solanum lycopersicum HOM05D001068 ORTHO05D003875 7.1e-10 66.6 46 65.2
Sopen08g026890 Solanum pennellii HOM05D001068 ORTHO05D003875 7.1e-10 66.6 46 65.2
MSTRG.12124 Avicennia marina HOM05D001068 ORTHO05D003875 9.2e-10 66.2 46 65.2
AUR62019981 Chenopodium quinoa HOM05D001068 ORTHO05D003875 9.2e-10 66.2 44 65.9
PSO782G5462 Papaver somniferum HOM05D001068 ORTHO05D003875 9.2e-10 66.2 46 67.4
ECA233G3500 Erigeron canadensis HOM05D001068 ORTHO05D003875 1.2e-09 65.9 47 59.6
Eucgr.E00406 Eucalyptus grandis HOM05D001068 ORTHO05D003875 1.2e-09 65.9 44 68.2
RcHm_v2.0_Chr3g0481201 Rosa chinensis HOM05D001068 ORTHO05D003875 1.2e-09 65.9 43 69.8
RcHm_v2.0_Chr3g0481221 Rosa chinensis HOM05D001068 ORTHO05D003875 1.2e-09 65.9 43 69.8
COL.COLO4_37120 Corchorus olitorius HOM05D001068 ORTHO05D003875 1.6e-09 65.5 47 61.7
SGA_v2.0_scaffold199G41219 Striga asiatica HOM05D001068 ORTHO05D003875 1.6e-09 65.5 46 65.2
Gohir.A09G196500 Gossypium hirsutum HOM05D001068 ORTHO05D003875 2.1e-09 65.1 47 66.0
Gorai.006G213900 Gossypium raimondii HOM05D001068 ORTHO05D003875 2.1e-09 65.1 47 66.0
Oeu040705.1 Olea europaea HOM05D001068 ORTHO05D003875 2.1e-09 65.1 46 67.4
CDE02G3830 Ceratophyllum demersum HOM05D001068 ORTHO05D003875 2.7e-09 64.7 47 63.8
Duzib068G1125 Durio zibethinus HOM05D001068 ORTHO05D003875 2.7e-09 64.7 47 59.6
SEGI_04770 Sequoiadendron giganteum HOM05D001068 ORTHO05D030031 3.5e-09 64.3 47 63.8
Migut.A01136 Erythranthe guttata HOM05D001068 ORTHO05D003875 4.6e-09 63.9 43 69.8
PGSC0003DMG400004827 Solanum tuberosum HOM05D001068 ORTHO05D003875 6.0e-09 63.5 46 63.0
HPP92_022429 Vanilla planifolia HOM05D001068 ORTHO05D003875 6.0e-09 63.5 46 63.0
GSVIVG01005812001 Vitis vinifera HOM05D001068 ORTHO05D003875 6.0e-09 63.5 45 64.4
Gohir.D09G191100 Gossypium hirsutum HOM05D001068 ORTHO05D003875 7.8e-09 63.2 47 63.8
Hund14578 Selenicereus undatus HOM05D001068 ORTHO05D003875 7.8e-09 63.2 44 63.6
Lalb_Chr16g0386611 Lupinus albus HOM05D001068 ORTHO05D003875 1.0e-08 62.8 48 66.7
HanXRQChr16g0501091 Helianthus annuus HOM05D001068 ORTHO05D003875 1.3e-08 62.4 46 63.0
EL10Ac5g12342 Beta vulgaris HOM05D001068 ORTHO05D003875 1.7e-08 62.0 44 63.6
Hund28547 Selenicereus undatus HOM05D001068 ORTHO05D003875 1.7e-08 62.0 44 63.6
Hund28548 Selenicereus undatus HOM05D001068 ORTHO05D003875 1.7e-08 62.0 44 63.6
THA.LOC104806669 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 2.3e-08 61.6 47 59.6
ECA233G2258 Erigeron canadensis HOM05D001068 ORTHO05D003875 3.0e-08 61.2 43 60.5
Lalb_Chr09g0329981 Lupinus albus HOM05D001068 ORTHO05D003875 3.0e-08 61.2 47 68.1
Ah.07g198830 Amaranthus hybridus HOM05D001068 ORTHO05D003875 3.9e-08 60.8 44 61.4
Zm00001eb379490 Zea mays HOM05D001068 ORTHO05D003875 5.1e-08 60.5 47 59.6
Glyma.17G144051 Glycine max HOM05D001068 ORTHO05D003875 8.6e-08 59.7 43 69.8
Os06g0103500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D003875 8.6e-08 59.7 44 63.6
Sc22g0001000 Simmondsia chinensis HOM05D001068 ORTHO05D003875 1.5e-07 58.9 43 62.8
Ah.12g054350 Amaranthus hybridus HOM05D001068 ORTHO05D003875 3.3e-07 57.8 43 62.8
DCAR_004991 Daucus carota HOM05D001068 ORTHO05D003875 9.5e-07 56.2 41 63.4


User provided reference genes

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