Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-74 282.7 184 100.0
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.1e-61 240.4 211 71.6
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 7.3e-61 237.7 211 78.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 5.3e-59 231.5 209 72.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.7e-54 216.5 210 73.3
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.6e-54 214.5 214 71.5
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 4.3e-53 211.8 211 71.1
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.1e-51 207.2 213 70.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 5.3e-51 204.9 213 68.1
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 4.9e-49 198.4 206 69.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.4e-48 196.1 242 61.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 5.4e-48 194.9 242 63.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 5.4e-48 194.9 242 63.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 5.4e-48 194.9 208 65.9
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.7e-47 192.6 219 66.2
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 7.9e-47 191.0 225 61.8
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.3e-46 190.3 213 62.0
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.8e-46 189.9 220 65.9
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.9e-46 188.7 217 62.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 6.7e-46 188.0 133 73.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.5e-45 186.8 219 64.8
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.5e-45 186.8 221 55.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.9e-45 186.4 228 55.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 2.5e-45 186.0 218 55.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 3.3e-45 185.7 201 61.7
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 3.3e-45 185.7 220 56.8
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.3e-45 185.7 217 62.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.3e-45 185.3 228 62.3
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.3e-45 185.3 228 62.3
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.3e-45 185.3 221 57.9
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.4e-45 184.5 217 58.5
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.6e-45 184.1 233 51.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 9.6e-45 184.1 219 59.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.3e-44 183.7 133 72.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-44 183.7 197 59.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.6e-44 183.3 220 64.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 2.1e-44 183.0 222 55.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.8e-44 182.6 230 60.4
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 3.7e-44 182.2 132 73.5
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.8e-44 181.8 134 72.4
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 6.2e-44 181.4 217 56.2
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.1e-43 180.6 134 70.1
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.1e-43 180.6 134 70.1
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-43 180.3 133 69.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.4e-43 180.3 134 71.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-43 179.9 216 56.5
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-43 179.9 219 56.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.8e-43 179.9 134 70.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.4e-43 179.5 215 56.7
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.1e-43 179.1 129 72.9
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.1e-43 179.1 134 73.1
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.0e-43 178.7 223 55.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.0e-43 178.7 204 66.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 6.9e-43 177.9 218 53.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 9.0e-43 177.6 219 54.8
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.2e-42 177.2 222 55.9
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.2e-42 177.2 218 49.5
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.2e-42 177.2 134 68.7
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.2e-42 177.2 216 49.5
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.6e-42 176.0 227 54.6
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.5e-42 175.3 134 67.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-41 174.1 219 58.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.0e-41 174.1 218 60.6
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.3e-41 173.7 210 55.2
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.3e-41 173.7 133 72.9
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.3e-41 173.7 218 60.6
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.3e-41 173.7 218 60.6
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.7e-41 173.3 210 54.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.7e-41 173.3 221 53.4
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-41 173.3 219 54.8
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.9e-41 172.6 216 53.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.9e-41 172.6 133 72.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.5e-41 171.4 134 67.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.5e-41 171.4 134 67.2
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 8.4e-41 171.0 230 51.7
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.1e-40 170.6 216 55.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-40 169.9 219 52.1
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.9e-40 169.9 131 68.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.9e-40 169.9 133 66.9
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.9e-40 169.9 233 54.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.2e-40 168.7 133 66.9
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.2e-40 168.7 133 66.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 5.5e-40 168.3 134 67.9
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 5.5e-40 168.3 135 66.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.1e-40 167.9 215 50.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 7.1e-40 167.9 134 67.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.2e-39 167.2 134 67.2
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.2e-39 167.2 240 48.3
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.7e-39 166.0 133 65.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 2.7e-39 166.0 207 54.6
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 7.9e-39 164.5 169 56.2
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 7.9e-39 164.5 127 67.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.3e-38 163.7 134 64.2
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.8e-38 163.3 134 62.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.8e-38 163.3 134 62.7
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.8e-38 163.3 216 50.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.3e-38 162.9 131 67.2
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-38 162.2 199 56.8
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 5.1e-38 161.8 134 62.7
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 8.7e-38 161.0 195 55.9
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.1e-37 160.6 133 62.4
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.1e-37 160.6 131 65.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.5e-37 160.2 188 67.0
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.9e-37 159.8 134 62.7
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 5.7e-37 158.3 132 62.1
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.4e-37 157.9 132 61.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 7.4e-37 157.9 132 61.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 9.6e-37 157.5 137 65.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 9.6e-37 157.5 199 52.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-36 156.4 132 61.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.7e-36 155.6 218 50.0
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.0e-34 149.8 113 72.6
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.6e-34 149.4 159 66.0
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.2e-33 146.4 112 68.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.5e-33 144.8 185 49.7
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 8.4e-33 144.4 193 49.7
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.2e-32 142.1 195 61.5
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 4.2e-32 142.1 194 50.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.3e-30 137.1 200 46.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 6.7e-30 134.8 185 47.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.9e-29 133.3 184 52.7
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.3e-29 132.5 108 66.7
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 4.3e-29 132.1 102 68.6
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.4e-29 131.3 132 53.8
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-28 130.6 83 80.7
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.2e-28 129.8 207 43.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.2e-28 129.8 207 43.0
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-28 129.0 167 55.7
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.8e-28 128.6 105 65.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.3e-28 128.3 196 42.9
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-27 125.9 134 53.7
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.1e-27 125.6 135 55.6
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.0e-26 123.2 198 43.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-26 122.9 190 43.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.7e-26 121.3 116 59.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-25 120.2 138 52.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.9e-25 119.4 133 49.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-25 119.0 211 47.9
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-25 119.0 140 50.7
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 6.5e-25 118.2 132 53.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 8.8e-22 107.8 135 48.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.1e-21 107.5 91 63.7
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-21 107.1 66 83.3
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 5.3e-19 98.6 110 48.2
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.6e-18 96.3 146 52.1
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 5.5e-16 88.6 215 40.5
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.2e-15 87.4 137 49.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 6.1e-15 85.1 151 49.0
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-14 84.3 135 49.6
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-11 73.6 86 48.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 7.0e-11 71.6 33 100.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 7.0e-11 71.6 33 100.0
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.9e-08 63.5 51 62.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.6e-07 59.3 69 44.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 3.6e-07 59.3 95 34.7
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 4.0e-06 55.8 33 78.8
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.7e-06 55.1 55 52.7


User provided reference genes

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