Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20736 Trifolium pratense HOM05D003410 ORTHO05D003881 9.3e-34 146.4 77 100.0
Medtr2g055920 Medicago truncatula HOM05D003410 ORTHO05D003881 1.3e-16 89.4 76 57.9
Ca_11898_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 1.2e-12 76.3 72 55.6
Medtr1g045505 Medicago truncatula HOM05D003410 ORTHO05D003881 5.0e-11 70.9 58 58.6
Lj6g0010954 Lotus japonicus HOM05D003410 ORTHO05D003881 2.5e-10 68.6 66 54.5
Lalb_Chr03g0036961 Lupinus albus HOM05D003410 ORTHO05D003881 9.4e-10 66.6 56 58.9
Sed0017794 Sechium edule HOM05D003410 ORTHO05D003881 1.6e-09 65.9 51 56.9
Rhsim02G0043700 Rhododendron simsii HOM05D003410 ORTHO05D003881 6.1e-09 63.9 51 58.8
Sed0016490 Sechium edule HOM05D003410 ORTHO05D003881 7.9e-09 63.5 51 56.9
GSVIVG01027914001 Vitis vinifera HOM05D003410 ORTHO05D003881 1.0e-08 63.2 56 53.6
GSVIVG01028415001 Vitis vinifera HOM05D003410 ORTHO05D003881 1.0e-08 63.2 51 54.9
MD00G1060300 Malus domestica HOM05D003410 ORTHO05D003881 1.8e-08 62.4 51 54.9
CSS0004045 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 2.3e-08 62.0 59 52.5
CiPaw.01G178000 Carya illinoinensis HOM05D003410 ORTHO05D003881 2.3e-08 62.0 67 47.8
Glyma.13G126900 Glycine max HOM05D003410 ORTHO05D003881 2.3e-08 62.0 51 56.9
Phvul.007G189500 Phaseolus vulgaris HOM05D003410 ORTHO05D003881 2.3e-08 62.0 51 56.9
Potri.014G192601 Populus trichocarpa HOM05D003410 ORTHO05D003881 2.3e-08 62.0 51 54.9
Sabra14G0143300 Salix brachista HOM05D003410 ORTHO05D003881 2.3e-08 62.0 51 54.9
CiPaw.03G270300 Carya illinoinensis HOM05D003410 ORTHO05D003881 3.0e-08 61.6 57 50.9
COL.COLO4_10574 Corchorus olitorius HOM05D003410 ORTHO05D003881 3.9e-08 61.2 51 54.9
Glyma.10G040200 Glycine max HOM05D003410 ORTHO05D003881 3.9e-08 61.2 51 56.9
Potri.002G257200 Populus trichocarpa HOM05D003410 ORTHO05D003881 3.9e-08 61.2 51 54.9
Prupe.8G216100 Prunus persica HOM05D003410 ORTHO05D003881 3.9e-08 61.2 51 52.9
Rhsim01G0260900 Rhododendron simsii HOM05D000074 ORTHO05D011471 3.9e-08 61.2 59 52.5
Sabra02G0195600 Salix brachista HOM05D003410 ORTHO05D003881 3.9e-08 61.2 51 54.9
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 6.7e-08 60.5 72 45.8
MELO3C023044.2 Cucumis melo HOM05D003410 ORTHO05D003881 6.7e-08 60.5 51 54.9
CsaV3_2G012420 Cucumis sativus L. HOM05D003410 ORTHO05D003881 6.7e-08 60.5 51 54.9
Lalb_Chr19g0128521 Lupinus albus HOM05D003410 ORTHO05D003881 6.7e-08 60.5 52 55.8
MBI10_g35429_MAGBIO Magnolia biondii HOM05D003410 ORTHO05D003881 6.7e-08 60.5 51 52.9
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 6.7e-08 60.5 67 49.3
CSS0029259 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 8.8e-08 60.1 51 54.9
Gohir.A07G204200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 8.8e-08 60.1 57 50.9
Gohir.D07G210200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 8.8e-08 60.1 57 50.9
Gorai.001G237600 Gossypium raimondii HOM05D003410 ORTHO05D003881 8.8e-08 60.1 57 50.9
Nn1g02957 Nelumbo nucifera HOM05D003410 ORTHO05D003881 8.8e-08 60.1 51 54.9
Sed0015699 Sechium edule HOM05D003410 ORTHO05D003881 8.8e-08 60.1 51 54.9
Thecc.01G251100 Theobroma cacao HOM05D003410 ORTHO05D003881 8.8e-08 60.1 57 50.9
TAR365G0976 Trochodendron aralioides HOM05D003410 ORTHO05D003881 8.8e-08 60.1 51 54.9
Gohir.D08G210000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.1e-07 59.7 57 49.1
Gorai.004G222400 Gossypium raimondii HOM05D003410 ORTHO05D003881 1.1e-07 59.7 57 49.1
Nn3g19777 Nelumbo nucifera HOM05D003410 ORTHO05D003881 1.1e-07 59.7 51 54.9
PGR031G2487 Punica granatum HOM05D003410 ORTHO05D003881 1.1e-07 59.7 51 51.0
Sed0011790 Sechium edule HOM05D003410 ORTHO05D003881 1.1e-07 59.7 51 54.9
SEGI_13440 Sequoiadendron giganteum HOM05D003410 ORTHO05D003881 1.1e-07 59.7 56 50.0
CSS0024044 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 1.5e-07 59.3 51 52.9
Duzib133G1351 Durio zibethinus HOM05D003410 ORTHO05D003881 1.5e-07 59.3 57 50.9
Eucgr.K01430 Eucalyptus grandis HOM05D003410 ORTHO05D003881 1.5e-07 59.3 51 51.0
TWI73G1070 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 1.5e-07 59.3 51 52.9
TAR688G0001 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.5e-07 59.3 56 50.0
Atru.chr4.1916 Acer truncatum HOM05D003410 ORTHO05D003881 2.0e-07 58.9 57 49.1
Actinidia39930 Actinidia chinensis HOM05D003410 ORTHO05D003881 2.0e-07 58.9 51 52.9
Lsat_1_v5_gn_0_8120 Lactuca sativa HOM05D003410 ORTHO05D003881 2.0e-07 58.9 59 49.2
Lalb_Chr21g0314111 Lupinus albus HOM05D003410 ORTHO05D003881 2.0e-07 58.9 57 49.1
Manes.12G036200 Manihot esculenta HOM05D003410 ORTHO05D003881 2.0e-07 58.9 51 52.9
TWI53G1829 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 2.0e-07 58.9 59 47.5
TAR362G0673 Trochodendron aralioides HOM05D003410 ORTHO05D003881 2.0e-07 58.9 51 52.9
Atru.chr5.1834 Acer truncatum HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
BcaC06g34608 Brassica carinata HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
BcaC06g34614 Brassica carinata HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
C07p26430 Brassica napus HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
C07p26530 Brassica napus HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
BolC7t43173H Brassica oleracea HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
Cfa014780 Carpinus fangiana HOM05D003410 ORTHO05D003881 2.6e-07 58.5 67 46.3
Cfa021012 Carpinus fangiana HOM05D003410 ORTHO05D003881 2.6e-07 58.5 67 46.3
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 2.6e-07 58.5 51 52.9
Dinv29803 Davidia involucrata HOM05D000001 ORTHO05D011120 2.6e-07 58.5 56 48.2
vmacro15478 Vaccinium macrocarpon HOM05D003410 ORTHO05D003881 2.6e-07 58.5 51 52.9
Cpa.g.sc87.22 Carica papaya HOM05D003410 ORTHO05D003881 3.3e-07 58.2 44 54.5
HanXRQChr05g0147801 Helianthus annuus HOM05D003410 ORTHO05D003881 3.3e-07 58.2 51 54.9
Manes.03G159000 Manihot esculenta HOM05D003410 ORTHO05D003881 3.3e-07 58.2 51 52.9
Manes.15G045700 Manihot esculenta HOM05D003410 ORTHO05D003881 3.3e-07 58.2 51 52.9
Sc13g0003120 Simmondsia chinensis HOM05D003410 ORTHO05D003881 3.3e-07 58.2 51 51.0
Actinidia09517 Actinidia chinensis HOM05D003410 ORTHO05D003881 4.4e-07 57.8 51 52.9
Duzib138G1667 Durio zibethinus HOM05D003410 ORTHO05D003881 4.4e-07 57.8 57 49.1
Migut.D00472 Erythranthe guttata HOM05D003410 ORTHO05D003881 4.4e-07 57.8 51 49.0
Gohir.D10G158500 Gossypium hirsutum HOM05D003410 ORTHO05D003881 4.4e-07 57.8 51 52.9
Gorai.011G178100 Gossypium raimondii HOM05D003410 ORTHO05D003881 4.4e-07 57.8 51 52.9
Ciclev10006291m.g Citrus clementina HOM05D003410 ORTHO05D003881 5.7e-07 57.4 59 45.8
Gohir.A07G151800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 5.7e-07 57.4 51 51.0
Gohir.D07G158100 Gossypium hirsutum HOM05D003410 ORTHO05D003881 5.7e-07 57.4 51 51.0
Lsat_1_v5_gn_2_104281 Lactuca sativa HOM05D003410 ORTHO05D003881 5.7e-07 57.4 51 52.9
THA.LOC104801123 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 5.7e-07 57.4 51 51.0
Cfa002479 Carpinus fangiana HOM05D003410 ORTHO05D003881 7.4e-07 57.0 51 47.1
Haze_24698 Corylus avellana HOM05D003410 ORTHO05D003881 7.4e-07 57.0 51 47.1
Gohir.A10G107800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 7.4e-07 57.0 51 51.0
Lj5g0002672 Lotus japonicus HOM05D003410 ORTHO05D003881 7.4e-07 57.0 49 55.1
Medtr1g069560 Medicago truncatula HOM05D003410 ORTHO05D003881 7.4e-07 57.0 57 45.6
Rhsim04G0172400 Rhododendron simsii HOM05D003410 ORTHO05D003881 7.4e-07 57.0 67 43.3
SHI01392 Sapria himalayana HOM05D003410 ORTHO05D003881 7.4e-07 57.0 51 51.0
TAR633G0988 Trochodendron aralioides HOM05D003410 ORTHO05D003881 7.4e-07 57.0 51 51.0
Zm00001eb038560 Zea mays HOM05D003410 ORTHO05D003881 7.4e-07 57.0 59 45.8
AL8G16140 Arabidopsis lyrata HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 51.0
AT5G43970 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 51.0
BolC7t43180H Brassica oleracea HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 51.0
CDE01G0063 Ceratophyllum demersum HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 51.0
Ca_09650_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 49.0
Gohir.A08G192000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 9.7e-07 56.6 57 47.4
Nitab4.5_0000326g0310 Nicotiana tabacum HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 49.0
Nitab4.5_0009671g0040 Nicotiana tabacum HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 49.0
Solyc06g008120.1 Solanum lycopersicum HOM05D003410 ORTHO05D003881 9.7e-07 56.6 71 45.1
Sopen06g002930 Solanum pennellii HOM05D003410 ORTHO05D003881 9.7e-07 56.6 71 45.1
THA.LOC104815972 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 9.7e-07 56.6 51 49.0
CsaV3_3G011700 Cucumis sativus L. HOM05D003410 ORTHO05D003881 1.3e-06 56.2 56 46.4
Duzib212G0034 Durio zibethinus HOM05D003410 ORTHO05D003881 1.3e-06 56.2 51 49.0
CANSAT01G0813 Cannabis sativa HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 49.0
Duzib151G0669 Durio zibethinus HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 49.0
ECA232G0562 Erigeron canadensis HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 49.0
Psat6g062760 Pisum sativum HOM05D003410 ORTHO05D003881 1.7e-06 55.8 57 45.6
Prupe.1G047800 Prunus persica HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 51.0
RcHm_v2.0_Chr6g0286751 Rosa chinensis HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 51.0
TAR633G0085 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 52.9
TAR633G1475 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.7e-06 55.8 51 52.9
A06p47590 Brassica napus HOM05D003410 ORTHO05D003881 2.2e-06 55.5 51 51.0
BraA06t27627Z Brassica rapa HOM05D003410 ORTHO05D003881 2.2e-06 55.5 51 51.0
Gorai.001G181300 Gossypium raimondii HOM05D003410 ORTHO05D003881 2.2e-06 55.5 51 49.0
Peaxi162Scf01157g00006 Petunia axillaris HOM05D003410 ORTHO05D003881 2.2e-06 55.5 51 49.0
QL06p020998 Quercus lobata HOM05D003410 ORTHO05D003881 2.2e-06 55.5 51 47.1
CiPaw.02G107100 Carya illinoinensis HOM05D003410 ORTHO05D003881 2.8e-06 55.1 67 43.3
Os02g0496900 Oryza sativa ssp. japonica HOM05D003410 ORTHO05D003881 2.8e-06 55.1 54 46.3
CARHR179430 Cardamine hirsuta HOM05D003410 ORTHO05D003881 3.7e-06 54.7 51 47.1
HanXRQChr11g0321361 Helianthus annuus HOM05D003410 ORTHO05D003881 3.7e-06 54.7 67 46.3
SalBow4G2851 Salvia bowleyana HOM05D003410 ORTHO05D003881 3.7e-06 54.7 51 47.1
HPP92_025323 Vanilla planifolia HOM05D003410 ORTHO05D003881 3.7e-06 54.7 57 43.9
Lj6E621T0 Lonicera japonica HOM05D003410 ORTHO05D003881 4.8e-06 54.3 71 45.1
Mapoly0045s0003 Marchantia polymorpha HOM05D003410 ORTHO05D003881 4.8e-06 54.3 54 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1763 Anthoceros agrestis HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 43.1
BcaB07g30549 Brassica carinata HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
BcaC04g21879 Brassica carinata HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
C09p26240 Brassica napus HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
BolC9t55525H Brassica oleracea HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
Thhalv10003294m.g Eutrema salsugineum HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
Glyma.11G177400 Glycine max HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 47.1
Sp2g08800 Schrenkiella parvula HOM05D003410 ORTHO05D003881 6.3e-06 53.9 51 49.0
BcaB07g30984 Brassica carinata HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 49.0
A09p20730 Brassica napus HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 47.1
BraA09t37677Z Brassica rapa HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 47.1
Carub.0008s0458 Capsella rubella HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 47.1
CAN.G941.30 Capsicum annuum HOM05D003410 ORTHO05D003881 8.2e-06 53.5 43 51.2
FvH4_2g20580 Fragaria vesca HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 45.1
FAN15G2918 Fragaria x ananassa HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 45.1
FAN24G0274 Fragaria x ananassa HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 45.1
FAN27G2598 Fragaria x ananassa HOM05D003410 ORTHO05D003881 8.2e-06 53.5 51 45.1


User provided reference genes

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