Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.2e-44 181.4 94 100.0
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.8e-40 168.3 94 91.5
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.8e-39 165.6 94 89.4
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 3.1e-39 164.9 94 91.5
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.5e-33 146.0 94 78.7
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 5.6e-33 144.1 94 78.7
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.3e-32 142.9 94 77.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 6.2e-32 140.6 94 76.6
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 9.9e-30 133.3 92 68.5
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.7e-29 132.5 94 69.1
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.1e-28 129.8 94 70.2
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.5e-28 127.5 94 69.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.5e-22 109.4 90 60.0
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 5.8e-22 107.5 90 61.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 4.9e-21 104.4 89 57.3
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.4e-21 103.6 94 57.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.1e-20 103.2 94 57.4
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.5e-20 102.1 94 57.4
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.5e-20 102.1 87 59.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 9.3e-20 100.1 89 58.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.2e-19 99.8 78 66.7
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.1e-19 99.0 86 60.5
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.1e-19 99.0 86 60.5
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.1e-19 99.0 89 56.2
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.7e-19 98.6 76 71.1
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.5e-19 98.2 77 64.9
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.5e-19 98.2 89 61.8
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 4.6e-19 97.8 89 56.2
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 6.0e-19 97.4 75 69.3
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 6.0e-19 97.4 83 62.7
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 6.0e-19 97.4 78 65.4
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.0e-18 96.7 86 59.3
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 1.3e-18 96.3 76 69.7
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-18 95.9 96 56.2
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.8e-18 95.9 77 66.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.3e-18 95.5 86 59.3
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.0e-18 95.1 96 55.2
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 3.0e-18 95.1 89 56.2
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 5.1e-18 94.4 74 66.2
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.1e-18 94.4 93 58.1
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 5.1e-18 94.4 97 54.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 5.1e-18 94.4 91 57.1
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 6.7e-18 94.0 74 68.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.7e-18 94.0 97 52.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 6.7e-18 94.0 77 66.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 8.7e-18 93.6 75 68.0
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.1e-17 93.2 77 64.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.1e-17 93.2 91 57.1
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.1e-17 93.2 90 57.8
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.1e-17 93.2 77 66.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.5e-17 92.8 76 67.1
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-17 92.8 74 67.6
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-17 92.8 74 67.6
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.5e-17 92.8 92 53.3
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.5e-17 92.8 75 66.7
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.5e-17 92.8 76 68.4
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.9e-17 92.4 66 71.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-17 92.4 76 65.8
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.9e-17 92.4 75 66.7
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.9e-17 92.4 83 62.7
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.9e-17 92.4 83 62.7
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.9e-17 92.4 77 64.9
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.9e-17 92.4 77 64.9
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.5e-17 92.0 76 65.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.5e-17 92.0 64 73.4
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.5e-17 92.0 74 68.9
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.5e-17 92.0 89 55.1
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.3e-17 91.7 76 65.8
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.3e-17 91.7 75 66.7
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.3e-17 91.3 64 73.4
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 5.7e-17 90.9 64 70.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 5.7e-17 90.9 75 65.3
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.7e-17 90.9 75 65.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 7.4e-17 90.5 70 71.4
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 7.4e-17 90.5 83 57.8
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 9.7e-17 90.1 76 65.8
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 9.7e-17 90.1 89 60.7
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.3e-16 89.7 86 57.0
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.3e-16 89.7 76 64.5
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.3e-16 89.7 89 55.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.3e-16 89.7 64 70.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.2e-16 89.0 73 68.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 2.8e-16 88.6 61 75.4
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 2.8e-16 88.6 58 79.3
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.8e-16 88.6 58 79.3
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 2.8e-16 88.6 64 71.9
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.8e-16 88.6 71 66.2
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 3.7e-16 88.2 80 62.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 3.7e-16 88.2 64 70.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 4.8e-16 87.8 89 55.1
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 4.8e-16 87.8 84 58.3
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 8.2e-16 87.0 75 62.7
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-15 86.7 91 52.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-15 86.7 91 52.7
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.1e-15 86.7 89 51.7
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-15 86.3 77 63.6
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.4e-15 86.3 63 71.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.8e-15 85.9 61 75.4
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 3.1e-15 85.1 77 62.3
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.1e-15 85.1 66 68.2
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 3.1e-15 85.1 61 72.1
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 6.9e-15 84.0 77 61.0
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-14 82.4 91 53.8
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 2.0e-14 82.4 91 53.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.6e-14 82.0 58 74.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 5.9e-14 80.9 61 63.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 7.7e-14 80.5 82 51.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.7e-13 79.3 51 82.4
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 2.2e-13 79.0 61 67.2
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.4e-12 76.3 105 49.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.6e-11 72.8 50 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.4e-07 59.7 52 63.5
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.6e-06 55.5 92 41.3
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 7.7e-06 53.9 50 58.0


User provided reference genes

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