Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 3153.2 1759 100.0
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 2575.8 1664 87.3
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 2541.1 1666 86.5
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 2438.7 1670 84.2
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 2266.5 1704 77.6
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 2261.9 1704 77.5
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 2238.0 1725 76.6
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 2199.5 1704 76.3
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 2182.9 1706 75.7
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 2151.7 1712 74.4
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 2032.7 1708 71.3
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1706.8 1725 62.4
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1596.3 1722 59.5
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1580.5 1723 59.0
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1572.8 1711 59.3
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1568.9 1730 58.6
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1560.8 1752 57.1
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1539.2 1721 58.5
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1535.0 1721 57.4
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1516.5 1654 56.7
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1510.7 1724 57.7
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1508.8 1724 58.8
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1479.9 1701 57.4
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1477.2 1726 57.0
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1473.8 1692 57.7
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1472.6 1692 57.6
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1471.8 1698 57.2
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1469.1 1700 56.6
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1456.4 1713 54.3
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1451.0 1803 54.7
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1446.0 1743 53.6
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1438.7 1726 54.9
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1433.3 1708 55.7
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1427.2 1740 54.5
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1426.8 1918 51.0
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1422.1 1521 60.6
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1418.3 1736 54.1
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1412.1 1703 54.0
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1397.9 1723 53.6
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1394.0 1693 55.4
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1384.8 1785 52.0
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1360.9 1401 61.0
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1346.6 1729 52.7
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1316.2 1501 58.2
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1301.6 1609 54.6
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1296.2 1733 52.3
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1292.7 1730 50.6
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1286.9 1702 52.6
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1281.5 1700 52.4
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1275.4 1735 51.2
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1269.6 1699 52.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1269.2 1740 49.9
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1268.8 1785 50.2
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1267.7 1800 49.9
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1265.8 1691 49.0
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1262.7 1724 51.3
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1241.1 1211 63.7
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1238.8 1725 49.3
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1227.6 1668 49.5
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1224.2 1798 49.5
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1218.4 1681 49.1
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1207.6 1306 60.6
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1204.9 1250 61.0
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1189.1 1487 52.8
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1180.2 1668 48.4
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1144.0 1442 53.2
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1139.0 1711 46.3
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1121.3 1243 59.4
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1093.6 1239 57.8
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.2e-311 1074.7 1467 52.3
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 6.0e-311 1071.6 953 64.2
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 7.0e-310 1068.1 1235 57.1
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 2.9e-308 1062.8 1241 56.5
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 2.4e-302 1043.1 1399 51.1
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 2.4e-294 1016.5 1717 43.2
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.2e-282 977.6 1498 47.7
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.2e-271 940.3 950 59.5
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 3.2e-270 936.4 1032 60.8
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.1e-262 911.4 823 63.5
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.3e-244 851.3 1462 44.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 8.1e-242 842.0 1372 45.5
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 4.8e-234 816.2 1145 49.0
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 2.9e-231 807.0 1218 48.5
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 1.2e-171 609.0 1059 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 3.1e-164 584.3 875 44.5
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 6.6e-143 513.5 541 57.5
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 7.3e-134 483.4 736 46.9
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.4e-132 479.2 852 43.3
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 5.4e-129 467.2 1177 33.4
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-112 412.9 715 44.3
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.6e-72 278.5 704 35.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 4.7e-72 278.1 714 36.8
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.7e-66 259.6 226 63.3
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 8.5e-66 257.3 260 55.4
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 6.8e-55 221.1 497 37.4
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 6.6e-50 204.5 215 57.7
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 6.4e-45 188.0 233 48.9
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 1.4e-39 170.2 155 58.7
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 5.2e-39 168.3 133 66.9
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.1e-36 158.7 171 52.6
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.7e-34 153.3 167 55.1
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-30 140.2 293 36.5
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 7.6e-30 137.9 1353 22.5
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.2e-28 132.5 131 65.6
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-23 117.5 105 58.1
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.2e-22 114.0 228 32.5
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 1.1e-20 107.5 133 48.9
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.3e-18 99.8 282 35.1
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 3.0e-18 99.4 281 27.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.9e-18 99.0 82 67.1
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.5e-14 87.0 88 56.8
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-14 85.5 59 61.0
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 1.4e-12 80.5 57 68.4
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 2.4e-12 79.7 155 36.1
unitig_37.g12720 Utricularia gibba HOM05D001674 ORTHO05D008599 3.1e-07 62.8 239 28.9


User provided reference genes

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