Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20454 Trifolium pratense HOM05D003220 ORTHO05D003944 1.7e-54 215.7 106 100.0
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 5.6e-29 131.0 106 66.0
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 5.0e-22 107.8 107 62.6
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 1.2e-20 103.2 106 57.5
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 1.6e-20 102.8 106 57.5
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 2.8e-20 102.1 108 56.5
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 6.2e-20 100.9 108 57.4
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 3.1e-19 98.6 106 55.7
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 1.7e-17 92.8 98 57.1
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 1.7e-17 92.8 98 55.1
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 4.9e-17 91.3 108 52.8
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 4.9e-17 91.3 108 52.8
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 3.2e-16 88.6 97 57.7
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 7.1e-16 87.4 97 53.6
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 1.6e-15 86.3 97 55.7
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 2.1e-15 85.9 93 58.1
Psat4g065240 Pisum sativum HOM05D003220 ORTHO05D003944 6.0e-15 84.3 108 47.2
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 1.3e-14 83.2 108 48.1
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.1e-13 80.1 96 55.2
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 2.5e-13 79.0 96 56.2
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 3.3e-13 78.6 108 48.1
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 4.3e-13 78.2 108 48.1
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 3.6e-12 75.1 106 50.0
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 5.2e-11 71.2 52 73.1
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 1.5e-10 69.7 115 42.6
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 3.4e-10 68.6 84 48.8
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 3.4e-10 68.6 84 48.8
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 4.4e-10 68.2 50 74.0
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 4.4e-10 68.2 50 74.0
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 5.8e-10 67.8 86 50.0
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 7.6e-10 67.4 101 45.5
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 7.6e-10 67.4 101 45.5
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 1.3e-09 66.6 86 50.0
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 1.7e-09 66.2 101 44.6
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 1.7e-09 66.2 96 46.9
Sabra08G0013500 Salix brachista HOM05D003220 ORTHO05D003944 1.7e-09 66.2 46 76.1
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 2.2e-09 65.9 62 54.8
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 2.2e-09 65.9 101 44.6
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 2.2e-09 65.9 84 47.6
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 2.2e-09 65.9 98 43.9
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 2.9e-09 65.5 84 47.6
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 2.9e-09 65.5 87 46.0
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 2.9e-09 65.5 51 66.7
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 4.9e-09 64.7 51 64.7
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 8.4e-09 63.9 80 51.2
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.4e-09 63.9 51 64.7
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.4e-09 63.9 51 64.7
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 8.4e-09 63.9 52 69.2
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 8.4e-09 63.9 92 44.6
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.1e-08 63.5 83 43.4
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.1e-08 63.5 62 53.2
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 1.1e-08 63.5 52 67.3
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 1.1e-08 63.5 106 39.6
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 1.1e-08 63.5 64 53.1
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 1.1e-08 63.5 84 47.6
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 1.4e-08 63.2 57 63.2
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 1.9e-08 62.8 80 48.8
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 1.9e-08 62.8 51 62.7
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 1.9e-08 62.8 113 39.8
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.9e-08 62.8 51 62.7
Nn4g26515 Nelumbo nucifera HOM05D003220 ORTHO05D003944 1.9e-08 62.8 103 42.7
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 1.9e-08 62.8 50 68.0
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 1.9e-08 62.8 64 53.1
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 1.9e-08 62.8 46 71.7
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 2.4e-08 62.4 92 45.7
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 2.4e-08 62.4 54 59.3
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 2.4e-08 62.4 78 47.4
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 3.2e-08 62.0 81 45.7
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 3.2e-08 62.0 48 68.8
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 3.2e-08 62.0 84 46.4
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 3.2e-08 62.0 91 45.1
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-08 62.0 51 62.7
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 3.2e-08 62.0 48 66.7
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 3.2e-08 62.0 46 71.7
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 4.1e-08 61.6 83 43.4
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 4.1e-08 61.6 83 44.6
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 4.1e-08 61.6 64 53.1
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 4.1e-08 61.6 39 74.4
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 4.1e-08 61.6 77 49.4
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 4.1e-08 61.6 52 65.4
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 5.4e-08 61.2 52 67.3
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 5.4e-08 61.2 44 72.7
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 5.4e-08 61.2 39 74.4
BolC7t45873H Brassica oleracea HOM05D003220 ORTHO05D003944 7.1e-08 60.8 80 47.5
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 7.1e-08 60.8 52 65.4
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 7.1e-08 60.8 48 68.8
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 9.2e-08 60.5 84 46.4
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 9.2e-08 60.5 55 60.0
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 9.2e-08 60.5 57 57.9
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 9.2e-08 60.5 48 68.8
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 9.2e-08 60.5 50 64.0
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 9.2e-08 60.5 46 69.6
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.2e-07 60.1 116 37.9
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 1.2e-07 60.1 62 53.2
Sabra10G0187200 Salix brachista HOM05D003220 ORTHO05D003944 1.2e-07 60.1 49 65.3
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 1.6e-07 59.7 63 52.4
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 1.6e-07 59.7 78 48.7
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 1.6e-07 59.7 67 55.2
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 1.6e-07 59.7 113 39.8
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 1.6e-07 59.7 99 43.4
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.6e-07 59.7 52 61.5
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 1.6e-07 59.7 49 65.3
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 2.1e-07 59.3 111 37.8
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 2.1e-07 59.3 52 61.5
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 2.1e-07 59.3 55 60.0
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 2.7e-07 58.9 50 66.0
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 2.7e-07 58.9 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 3.5e-07 58.5 37 73.0
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 3.5e-07 58.5 49 61.2
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 3.5e-07 58.5 85 44.7
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 3.5e-07 58.5 61 54.1
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 3.5e-07 58.5 50 64.0
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 3.5e-07 58.5 47 68.1
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.6e-07 58.2 116 39.7
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 6.0e-07 57.8 44 63.6
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 6.0e-07 57.8 77 48.1
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 6.0e-07 57.8 113 36.3
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 7.8e-07 57.4 89 40.4
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 1.0e-06 57.0 37 75.7
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 1.0e-06 57.0 48 62.5
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 1.3e-06 56.6 42 66.7
Dinv04869 Davidia involucrata HOM05D003220 ORTHO05D003944 1.3e-06 56.6 37 73.0
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.3e-06 56.6 35 74.3
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.3e-06 56.6 35 74.3
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 1.3e-06 56.6 50 62.0
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.7e-06 56.2 26 100.0
Rhsim02G0083400 Rhododendron simsii HOM05D003220 ORTHO05D003944 2.3e-06 55.8 52 59.6
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 2.3e-06 55.8 36 77.8
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 2.3e-06 55.8 26 96.2
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 3.9e-06 55.1 45 66.7
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 3.9e-06 55.1 58 55.2
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 3.9e-06 55.1 55 54.5
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 5.1e-06 54.7 49 61.2
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 5.1e-06 54.7 26 92.3
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 5.1e-06 54.7 46 63.0
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 5.1e-06 54.7 60 53.3
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 8.6e-06 53.9 63 49.2
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 8.6e-06 53.9 26 92.3


User provided reference genes

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