Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20402 Trifolium pratense HOM05D003169 ORTHO05D003700 3.3e-26 120.9 61 100.0
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 3.3e-26 120.9 61 100.0
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.1e-25 118.2 61 98.4
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 6.3e-25 116.7 60 96.7
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 6.3e-25 116.7 60 96.7
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 1.1e-24 115.9 61 95.1
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 1.4e-24 115.5 60 95.0
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 1.4e-24 115.5 60 95.0
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 1.4e-24 115.5 60 95.0
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 1.4e-24 115.5 60 95.0
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.4e-24 115.5 60 95.0
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 1.8e-24 115.2 60 95.0
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 1.8e-24 115.2 60 95.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 1.8e-24 115.2 60 93.3
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 91.7
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 91.7
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 93.3
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 91.7
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 3.1e-24 114.4 60 91.7
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 93.3
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 93.3
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 93.3
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 93.3
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 95.0
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 4.1e-24 114.0 60 93.3
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 5.3e-24 113.6 60 93.3
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 5.3e-24 113.6 60 93.3
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 93.3
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 93.3
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 6.9e-24 113.2 60 91.7
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 9.0e-24 112.8 60 91.7
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 9.0e-24 112.8 60 90.0
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 9.0e-24 112.8 60 91.7
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.2e-23 112.5 60 91.7
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 2.0e-23 111.7 60 88.3
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 2.0e-23 111.7 60 88.3
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 2.0e-23 111.7 60 90.0
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 2.0e-23 111.7 60 91.7
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.0e-23 111.7 60 91.7
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 2.6e-23 111.3 60 90.0
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 3.4e-23 110.9 60 88.3
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 3.4e-23 110.9 60 88.3
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 88.3
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 88.3
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 88.3
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 88.3
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 90.0
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 88.3
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 4.5e-23 110.5 60 90.0
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 5.9e-23 110.2 60 86.7
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 5.9e-23 110.2 60 91.7
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 5.9e-23 110.2 60 91.7
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 7.6e-23 109.8 60 88.3
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 7.6e-23 109.8 60 90.0
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 7.6e-23 109.8 60 88.3
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 1.0e-22 109.4 60 88.3
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 1.0e-22 109.4 60 86.7
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 1.3e-22 109.0 60 88.3
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.3e-22 109.0 60 86.7
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.3e-22 109.0 60 90.0
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 1.7e-22 108.6 60 88.3
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 1.7e-22 108.6 60 88.3
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 2.2e-22 108.2 60 85.0
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 2.2e-22 108.2 60 90.0
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 2.2e-22 108.2 60 85.0
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 2.2e-22 108.2 60 91.7
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 2.9e-22 107.8 60 88.3
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.9e-22 107.8 60 86.7
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 3.8e-22 107.5 60 85.0
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.8e-22 107.5 60 88.3
SEGI_14617 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.8e-22 107.5 60 86.7
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 3.8e-22 107.5 59 89.8
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 5.0e-22 107.1 60 90.0
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 5.0e-22 107.1 60 86.7
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 5.0e-22 107.1 60 86.7
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 5.0e-22 107.1 60 86.7
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 5.0e-22 107.1 60 86.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 6.5e-22 106.7 59 86.4
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 6.5e-22 106.7 60 86.7
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 8.5e-22 106.3 60 85.0
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 1.1e-21 105.9 60 88.3
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 1.1e-21 105.9 60 83.3
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 2.5e-21 104.8 65 83.1
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 2.5e-21 104.8 59 88.1
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 2.5e-21 104.8 59 88.1
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 4.2e-21 104.0 63 84.1
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 4.2e-21 104.0 63 84.1
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 7.2e-21 103.2 59 86.4
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 9.3e-21 102.8 69 78.3
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 1.2e-20 102.4 60 85.0
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 1.2e-20 102.4 60 85.0
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.2e-20 102.4 60 85.0
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 1.6e-20 102.1 68 77.9
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 2.1e-20 101.7 60 83.3
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 3.6e-20 100.9 60 83.3
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 6.1e-20 100.1 73 72.6
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 6.1e-20 100.1 73 72.6
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 6.1e-20 100.1 73 72.6
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 6.1e-20 100.1 73 72.6
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.8e-19 98.6 77 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 5.1e-19 97.1 61 80.3
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 8.7e-19 96.3 60 83.3
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 8.7e-19 96.3 62 77.4
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 1.1e-18 95.9 60 78.3
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 1.1e-18 95.9 60 80.0
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 1.5e-18 95.5 74 70.3
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 1.9e-18 95.1 61 82.0
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 2.5e-18 94.7 61 80.3
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 4.3e-18 94.0 61 78.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 5.7e-18 93.6 59 79.7
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 2.8e-17 91.3 59 76.3
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 4.8e-17 90.5 98 54.1
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 1.8e-16 88.6 100 52.0
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 4.1e-16 87.4 60 75.0
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 4.1e-16 87.4 60 75.0
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.1e-10 69.3 58 63.8
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 7.4e-10 66.6 61 57.4
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 3.7e-09 64.3 60 56.7
Aqoxy1G03228 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 6.3e-09 63.5 59 57.6
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 1.1e-08 62.8 34 91.2
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 4.1e-08 60.8 61 55.7
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.2e-07 59.3 58 58.6
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.0e-07 58.5 60 56.7
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.3e-06 55.8 54 57.4
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.3e-06 55.8 59 54.2
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.8e-06 54.3 54 55.6


User provided reference genes

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