Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20331 Trifolium pratense HOM05D002812 ORTHO05D003071 1.7e-72 276.2 173 100.0
Medtr4g121890 Medicago truncatula HOM05D002812 ORTHO05D003071 2.8e-62 242.3 173 83.8
Ca_21452_v3 Cicer arietinum L. HOM05D002812 ORTHO05D003071 2.4e-61 239.2 173 85.0
Glyma.17G032400 Glycine max HOM05D002812 ORTHO05D003071 2.4e-53 212.6 174 75.3
Phvul.003G112400 Phaseolus vulgaris HOM05D002812 ORTHO05D003071 3.4e-52 208.8 173 75.7
Glyma.07G241500 Glycine max HOM05D002812 ORTHO05D003071 5.0e-51 204.9 174 73.6
Psat4g023560 Pisum sativum HOM05D002812 ORTHO05D003071 6.5e-51 204.5 176 78.4
Lalb_Chr18g0058841 Lupinus albus HOM05D002812 ORTHO05D003071 1.3e-43 180.3 173 65.9
arahy.Tifrunner.gnm1.ann1.NWW8JA Arachis hypogaea HOM05D002812 ORTHO05D003071 1.1e-42 177.2 149 68.5
Lj4g0024803 Lotus japonicus HOM05D002812 ORTHO05D003071 3.2e-42 175.6 174 69.0
Lalb_Chr13g0298401 Lupinus albus HOM05D002812 ORTHO05D003071 1.8e-40 169.9 147 69.4
arahy.Tifrunner.gnm1.ann1.SIM9W4 Arachis hypogaea HOM05D002812 ORTHO05D003071 3.0e-40 169.1 173 57.8
arahy.Tifrunner.gnm1.ann1.H4Q3P5 Arachis hypogaea HOM05D002812 ORTHO05D003071 3.9e-40 168.7 173 57.8
arahy.Tifrunner.gnm1.ann1.M9PALT Arachis hypogaea HOM05D002812 ORTHO05D003071 8.2e-38 161.0 149 65.1
CiPaw.01G140100 Carya illinoinensis HOM05D002812 ORTHO05D003071 2.0e-36 156.4 174 58.0
Lj6g0011835 Lotus japonicus HOM05D002812 ORTHO05D003071 2.0e-36 156.4 149 61.1
Ca_01873_v3 Cicer arietinum L. HOM05D002812 ORTHO05D003071 8.5e-35 151.0 171 57.3
Glyma.15G143000 Glycine max HOM05D002812 ORTHO05D003071 8.5e-35 151.0 149 63.1
Glyma.09G037900 Glycine max HOM05D002812 ORTHO05D003071 5.5e-34 148.3 149 61.7
Thecc.04G297200 Theobroma cacao HOM05D002812 ORTHO05D003071 5.5e-34 148.3 174 55.7
MD16G1157400 Malus domestica HOM05D002812 ORTHO05D003071 7.9e-33 144.4 175 58.9
Prupe.1G122300 Prunus persica HOM05D002812 ORTHO05D003071 1.8e-32 143.3 174 55.2
QL06p011601 Quercus lobata HOM05D002812 ORTHO05D003071 2.3e-32 142.9 172 52.9
Duzib052G0636 Durio zibethinus HOM05D002812 ORTHO05D003071 3.9e-32 142.1 173 50.3
Medtr2g034560 Medicago truncatula HOM05D002812 ORTHO05D003071 5.1e-32 141.7 173 58.4
Haze_01274 Corylus avellana HOM05D002812 ORTHO05D003071 8.8e-32 141.0 175 49.7
CiPaw.02G076000 Carya illinoinensis HOM05D002812 ORTHO05D003071 2.6e-31 139.4 173 57.2
COL.COLO4_34651 Corchorus olitorius HOM05D002812 ORTHO05D003071 7.4e-31 137.9 175 53.7
MD13G1156500 Malus domestica HOM05D002812 ORTHO05D003071 9.7e-31 137.5 174 56.9
Atru.chr4.2987 Acer truncatum HOM05D002812 ORTHO05D003071 1.3e-30 137.1 175 54.3
Duzib151G0543 Durio zibethinus HOM05D002812 ORTHO05D003071 1.3e-30 137.1 175 60.0
Cpa.g.sc9.90 Carica papaya HOM05D002812 ORTHO05D003071 3.7e-30 135.6 176 56.8
TWI73G1014 Tripterygium wilfordii HOM05D002812 ORTHO05D003071 3.7e-30 135.6 175 58.3
Ciclev10004319m.g Citrus clementina HOM05D002812 ORTHO05D003071 1.1e-29 134.0 174 57.5
FAN12G2752 Fragaria x ananassa HOM05D002812 ORTHO05D003071 1.8e-29 133.3 173 58.4
FAN12G3060 Fragaria x ananassa HOM05D002812 ORTHO05D003071 1.8e-29 133.3 173 58.4
FvH4_4g19450 Fragaria vesca HOM05D002812 ORTHO05D003071 2.4e-29 132.9 146 54.1
Duzib212G0980 Durio zibethinus HOM05D002812 ORTHO05D003071 3.1e-29 132.5 173 57.8
TWI53G0399 Tripterygium wilfordii HOM05D002812 ORTHO05D003071 3.1e-29 132.5 147 55.8
Phvul.009G255000 Phaseolus vulgaris HOM05D002812 ORTHO05D003071 2.0e-28 129.8 173 49.1
Gohir.A09G235300 Gossypium hirsutum HOM05D002812 ORTHO05D003071 3.5e-28 129.0 149 55.0
RcHm_v2.0_Chr4g0424501 Rosa chinensis HOM05D002812 ORTHO05D003071 3.5e-28 129.0 173 54.3
Gorai.006G259200 Gossypium raimondii HOM05D002812 ORTHO05D003071 7.7e-28 127.9 149 54.4
CSS0000431 Camellia sinensis var. sinensis HOM05D002812 ORTHO05D003071 1.7e-27 126.7 174 51.7
FAN07G2008 Fragaria x ananassa HOM05D002812 ORTHO05D003071 1.7e-27 126.7 146 53.4
Actinidia14263 Actinidia chinensis HOM05D002812 ORTHO05D003071 2.2e-27 126.3 173 49.1
Gohir.A10G171100 Gossypium hirsutum HOM05D002812 ORTHO05D003071 3.8e-27 125.6 150 56.7
Gohir.D10G178200 Gossypium hirsutum HOM05D002812 ORTHO05D003071 8.5e-27 124.4 150 56.0
Gorai.005G066100 Gossypium raimondii HOM05D002812 ORTHO05D003071 1.1e-26 124.0 174 49.4
GSVIVG01035021001 Vitis vinifera HOM05D002812 ORTHO05D003071 1.5e-26 123.6 174 51.1
ClCG06G004660 Citrullus lanatus HOM05D002812 ORTHO05D003071 1.9e-26 123.2 151 53.0
Gohir.D09G236100 Gossypium hirsutum HOM05D002812 ORTHO05D003071 1.9e-26 123.2 149 53.7
PGR031G1109 Punica granatum HOM05D002812 ORTHO05D003071 1.9e-26 123.2 178 51.7
Gohir.A02G053800 Gossypium hirsutum HOM05D002812 ORTHO05D003071 2.5e-26 122.9 174 49.4
Actinidia40360 Actinidia chinensis HOM05D002812 ORTHO05D003071 3.2e-26 122.5 149 52.3
CSS0023058 Camellia sinensis var. sinensis HOM05D002812 ORTHO05D003071 3.2e-26 122.5 174 46.0
Potri.010G142200 Populus trichocarpa HOM05D002812 ORTHO05D003071 1.2e-25 120.6 175 53.7
VMungo1309G1536 Vigna mungo HOM05D002812 ORTHO05D003071 1.2e-25 120.6 149 52.3
Eucgr.A00349 Eucalyptus grandis HOM05D002812 ORTHO05D003071 1.6e-25 120.2 148 53.4
Sabra08G0081200 Salix brachista HOM05D002812 ORTHO05D003071 2.1e-25 119.8 174 55.2
TWI09G0948 Tripterygium wilfordii HOM05D002812 ORTHO05D003071 2.1e-25 119.8 173 52.0
Actinidia13366 Actinidia chinensis HOM05D002812 ORTHO05D003071 3.0e-24 115.9 173 45.1
Gorai.011G199200 Gossypium raimondii HOM05D002812 ORTHO05D003071 4.0e-24 115.5 150 55.3
Potri.008G107300 Populus trichocarpa HOM05D002812 ORTHO05D003071 8.8e-24 114.4 175 52.6
Lj3A829G36 Lonicera japonica HOM05D002812 ORTHO05D003071 1.1e-23 114.0 152 51.3
vmacro08064 Vaccinium macrocarpon HOM05D002812 ORTHO05D003071 1.1e-23 114.0 149 50.3
Sed0003912 Sechium edule HOM05D002812 ORTHO05D003071 1.5e-23 113.6 151 48.3
Manes.03G202600 Manihot esculenta HOM05D002812 ORTHO05D003071 7.5e-23 111.3 150 46.7
Lj6C689G0 Lonicera japonica HOM05D002812 ORTHO05D003071 9.7e-23 110.9 173 49.7
Actinidia15592 Actinidia chinensis HOM05D002812 ORTHO05D003071 2.2e-22 109.8 137 51.1
Manes.15G005600 Manihot esculenta HOM05D002812 ORTHO05D003071 2.2e-22 109.8 174 48.9
TPR.G5761 Trifolium pratense HOM05D002812 ORTHO05D003071 1.4e-21 107.1 128 60.9
Solyc12g099320.2 Solanum lycopersicum HOM05D002812 ORTHO05D003071 4.1e-21 105.5 173 45.1
Sopen12g034000 Solanum pennellii HOM05D002812 ORTHO05D003071 7.0e-21 104.8 174 44.8
VMungo1215G0847 Vigna mungo HOM05D000025 ORTHO05D030727 7.0e-21 104.8 136 50.7
Rhsim04G0234000 Rhododendron simsii HOM05D002812 ORTHO05D003071 4.5e-20 102.1 149 46.3
Sabra10G0109900 Salix brachista HOM05D002812 ORTHO05D003071 4.5e-20 102.1 169 52.1
EL10Ac3g05461 Beta vulgaris HOM05D002812 ORTHO05D003071 5.9e-20 101.7 147 48.3
Gohir.D02G058501 Gossypium hirsutum HOM05D002812 ORTHO05D003071 7.7e-20 101.3 174 48.3
Nitab4.5_0000570g0380 Nicotiana tabacum HOM05D002812 ORTHO05D003071 2.9e-19 99.4 142 49.3
CANSAT78G1319 Cannabis sativa HOM05D002812 ORTHO05D003071 5.0e-19 98.6 156 46.8
Nitab4.5_0002150g0230 Nicotiana tabacum HOM05D002812 ORTHO05D003071 6.5e-19 98.2 173 52.6
CsaV3_3G015100 Cucumis sativus L. HOM05D002812 ORTHO05D003071 3.2e-18 95.9 176 43.8
Peaxi162Scf00017g00815 Petunia axillaris HOM05D002812 ORTHO05D003071 4.2e-18 95.5 149 47.7
CAN.G484.57 Capsicum annuum HOM05D002812 ORTHO05D003071 7.2e-18 94.7 173 48.6
MELO3C006705.2 Cucumis melo HOM05D002812 ORTHO05D003071 8.0e-17 91.3 176 48.3
ClCG05G006450 Citrullus lanatus HOM05D002812 ORTHO05D003071 1.4e-16 90.5 175 38.3
Oeu046569.1 Olea europaea HOM05D002812 ORTHO05D003071 2.0e-15 86.7 174 45.4
Cc03_g01010 Coffea canephora HOM05D002812 ORTHO05D003071 2.6e-15 86.3 149 46.3
THA.LOC104827092 Tarenaya hassleriana HOM05D002812 ORTHO05D003071 3.4e-15 85.9 151 45.0
Ah.13g072010 Amaranthus hybridus HOM05D002812 ORTHO05D003071 9.8e-15 84.3 179 40.8
Migut.G00089 Erythranthe guttata HOM05D002812 ORTHO05D003071 2.2e-14 83.2 142 45.8
Solyc01g060080.4 Solanum lycopersicum HOM05D002812 ORTHO05D003071 4.8e-14 82.0 148 43.2
DCAR_023346 Daucus carota HOM05D002812 ORTHO05D003071 6.3e-14 81.6 180 40.0
DCAR_002505 Daucus carota HOM05D002812 ORTHO05D003071 1.1e-13 80.9 147 41.5
Sopen01g026260 Solanum pennellii HOM05D002812 ORTHO05D003071 4.1e-13 79.0 149 43.0
MSTRG.10143 Avicennia marina HOM05D002812 ORTHO05D003071 5.4e-13 78.6 174 37.4
CAN.G197.5 Capsicum annuum HOM05D002812 ORTHO05D003071 7.0e-13 78.2 147 42.9
Peaxi162Scf00065g00111 Petunia axillaris HOM05D002812 ORTHO05D003071 9.1e-13 77.8 174 45.4
AUR62016132 Chenopodium quinoa HOM05D002812 ORTHO05D003071 2.0e-12 76.6 180 35.6
Gohir.D02G058450 Gossypium hirsutum HOM05D002812 ORTHO05D003071 2.0e-12 76.6 174 42.0
SGA_v2.0_scaffold67G22576 Striga asiatica HOM05D002812 ORTHO05D003071 2.0e-12 76.6 175 44.6
Hma1.2p1_0013F.1_g008750 Hydrangea macrophylla HOM05D002812 ORTHO05D003071 2.7e-12 76.3 149 38.3
MSTRG.24815 Avicennia marina HOM05D002812 ORTHO05D003071 5.9e-12 75.1 175 44.0
VMungo0808G0001 Vigna mungo HOM05D058346 ORTHO05D030727 5.9e-12 75.1 106 49.1
AUR62041405 Chenopodium quinoa HOM05D002812 ORTHO05D003071 1.7e-11 73.6 178 36.0
Sed0015193 Sechium edule HOM05D002812 ORTHO05D003071 2.2e-11 73.2 97 48.5
CARHR081270 Cardamine hirsuta HOM05D002812 ORTHO05D003071 6.5e-11 71.6 173 48.0
Oeu037314.4 Olea europaea HOM05D002812 ORTHO05D003435 3.2e-10 69.3 157 42.0
THA.LOC104802704 Tarenaya hassleriana HOM05D002812 ORTHO05D003071 7.2e-10 68.2 152 40.1
Carub.0003s0622 Capsella rubella HOM05D002812 ORTHO05D003071 9.4e-10 67.8 173 39.3
AT3G06670 Arabidopsis thaliana HOM05D002812 ORTHO05D003071 1.2e-09 67.4 173 43.4
A03p34800 Brassica napus HOM05D002812 ORTHO05D003071 1.2e-09 67.4 173 43.4
BolC3t16509H Brassica oleracea HOM05D002812 ORTHO05D003071 1.2e-09 67.4 173 43.9
HanXRQChr05g0145761 Helianthus annuus HOM05D002812 ORTHO05D003071 2.7e-09 66.2 117 59.8
Sp3g05660 Schrenkiella parvula HOM05D002812 ORTHO05D003071 3.6e-09 65.9 173 48.0
THA.LOC104818893 Tarenaya hassleriana HOM05D002812 ORTHO05D003071 3.6e-09 65.9 151 39.7
C03p42390 Brassica napus HOM05D002812 ORTHO05D003071 8.0e-09 64.7 173 43.4
Ah.04g154690 Amaranthus hybridus HOM05D002812 ORTHO05D003071 1.8e-08 63.5 141 38.3
BNapus_Darmor_BZH_scaffold_117p00020 Brassica napus HOM05D002812 ORTHO05D003071 1.8e-08 63.5 175 46.9
BraA03t12661Z Brassica rapa HOM05D002812 ORTHO05D003071 3.0e-08 62.8 147 38.8
Thhalv10020042m.g Eutrema salsugineum HOM05D002812 ORTHO05D003071 3.0e-08 62.8 142 39.4
HanXRQChr01g0029941 Helianthus annuus HOM05D002812 ORTHO05D003071 1.5e-07 60.5 110 60.0
BcaC05g30551 Brassica carinata HOM05D002812 ORTHO05D003071 2.0e-07 60.1 173 43.4
unitig_0.g2585 Utricularia gibba HOM05D002812 ORTHO05D003071 2.0e-07 60.1 167 34.7
BolC1t05592H Brassica oleracea HOM05D002812 ORTHO05D003071 3.4e-07 59.3 150 42.0
SalBow8G0942 Salvia bowleyana HOM05D002812 ORTHO05D003071 5.7e-07 58.5 178 45.5
SalBow8G3917 Salvia bowleyana HOM05D002812 ORTHO05D003071 5.7e-07 58.5 178 45.5
Migut.N00050 Erythranthe guttata HOM05D002812 ORTHO05D003071 7.5e-07 58.2 137 35.8
Lsat_1_v5_gn_6_114340 Lactuca sativa HOM05D002812 ORTHO05D003071 3.7e-06 55.8 98 46.9


User provided reference genes

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