Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.4e-47 191.8 96 100.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 9.2e-15 83.6 41 95.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.5e-14 81.6 41 90.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.0e-13 80.1 41 90.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-13 78.6 37 100.0
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.5e-12 76.3 41 82.9
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.9e-12 75.9 41 82.9
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.9e-12 75.9 41 82.9
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 9.6e-12 73.6 41 82.9
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 9.6e-12 73.6 41 82.9
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-11 73.2 41 80.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.1e-11 72.4 41 78.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.1e-11 72.4 41 78.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 6.2e-11 70.9 33 100.0
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 8.1e-11 70.5 41 75.6
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 8.1e-11 70.5 42 81.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.1e-10 70.1 41 75.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.4e-10 69.7 41 78.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 3.1e-10 68.6 41 75.6
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.1e-10 68.6 41 75.6
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.1e-10 68.6 41 75.6
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 4.0e-10 68.2 41 75.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 4.0e-10 68.2 41 73.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 4.0e-10 68.2 44 68.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 5.2e-10 67.8 41 75.6
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 5.2e-10 67.8 43 74.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 6.8e-10 67.4 41 73.2
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.8e-10 67.4 41 73.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.8e-10 67.4 41 73.2
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 73.2
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 73.2
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 73.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 73.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 8.9e-10 67.0 41 70.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 70.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 70.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 73.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.2e-09 66.6 40 75.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 70.7
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 73.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 73.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.2e-09 66.6 41 70.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 70.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 70.7
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 68.3
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 70.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 73.2
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 70.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.5e-09 66.2 41 70.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.0e-09 65.9 41 70.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.0e-09 65.9 41 70.7
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.0e-09 65.9 41 70.7
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.0e-09 65.9 41 70.7
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.6e-09 65.5 41 70.7
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.6e-09 65.5 47 66.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.6e-09 65.5 41 70.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.6e-09 65.5 41 70.7
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 65.9
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 65.9
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 68.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 70.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 3.4e-09 65.1 41 73.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 73.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 70.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 70.7
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 70.7
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 3.4e-09 65.1 41 68.3
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.4e-09 64.7 41 68.3
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.4e-09 64.7 41 68.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 4.4e-09 64.7 41 68.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.4e-09 64.7 41 68.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 5.8e-09 64.3 41 65.9
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 5.8e-09 64.3 41 65.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.8e-09 64.3 41 68.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.8e-09 64.3 41 68.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.8e-09 64.3 41 70.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.8e-09 64.3 55 54.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.8e-09 64.3 40 70.0
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 7.6e-09 63.9 41 70.7
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 7.6e-09 63.9 40 67.5
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 7.6e-09 63.9 41 65.9
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.6e-09 63.9 41 65.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 7.6e-09 63.9 40 70.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 9.9e-09 63.5 41 65.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.9e-09 63.5 41 68.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 9.9e-09 63.5 41 70.7
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 9.9e-09 63.5 41 68.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.3e-08 63.2 41 63.4
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.3e-08 63.2 41 68.3
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.3e-08 63.2 41 68.3
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.3e-08 63.2 40 70.0
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.3e-08 63.2 41 65.9
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-08 63.2 39 76.9
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 65.9
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 68.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 65.9
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 65.9
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 65.9
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 65.9
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.7e-08 62.8 41 68.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.2e-08 62.4 41 68.3
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.2e-08 62.4 41 68.3
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 2.2e-08 62.4 41 68.3
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.2e-08 62.4 40 70.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.8e-08 61.6 41 65.9
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.8e-08 61.6 41 65.9
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 4.9e-08 61.2 41 65.9
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.9e-08 61.2 39 69.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 6.4e-08 60.8 41 63.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 6.4e-08 60.8 41 63.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.4e-08 60.8 41 63.4
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.4e-08 60.8 41 65.9
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.1e-07 60.1 40 67.5
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.1e-07 60.1 40 67.5
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.9e-07 59.3 41 63.4
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 2.4e-07 58.9 39 66.7
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.2e-07 58.5 41 61.0
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 3.2e-07 58.5 36 72.2
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 4.2e-07 58.2 31 77.4
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 7.1e-07 57.4 44 59.1
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 9.3e-07 57.0 34 79.4
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 9.3e-07 57.0 41 61.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-06 56.2 41 58.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-06 56.2 41 58.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.6e-06 56.2 41 58.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.5e-06 55.1 41 58.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-06 54.7 41 56.1
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 6.0e-06 54.3 32 71.9
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 7.8e-06 53.9 40 60.0


User provided reference genes

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