Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.6e-157 558.9 330 100.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.7e-140 503.1 330 77.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 8.3e-140 500.7 330 78.2
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 5.8e-133 478.0 327 74.3
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.3e-129 466.8 331 74.0
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 6.6e-129 464.5 330 71.8
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 6.6e-129 464.5 331 71.3
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.5e-128 463.4 330 72.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 7.3e-128 461.1 331 71.0
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.9e-120 436.4 327 70.3
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.1e-118 430.6 320 70.3
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.8e-118 429.9 314 70.1
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.1e-118 429.1 325 71.1
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.0e-118 428.7 319 69.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 5.3e-118 428.3 317 69.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.5e-117 426.8 319 69.3
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.6e-117 424.5 322 72.0
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.7e-116 423.3 320 68.8
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-116 423.3 317 69.4
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-116 423.3 317 67.2
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.2e-116 422.9 328 72.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 8.4e-116 421.0 322 71.1
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.4e-115 420.2 317 70.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 3.2e-115 419.1 315 65.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 4.2e-115 418.7 316 70.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.1e-115 417.9 316 71.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 9.3e-115 417.5 328 65.2
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.6e-114 416.8 331 69.8
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.1e-114 416.4 316 71.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.7e-114 416.0 325 71.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.6e-114 415.2 316 73.4
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 6.0e-114 414.8 333 72.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 7.8e-114 414.5 320 65.9
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.8e-114 414.5 316 66.8
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.8e-114 414.5 316 66.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.7e-113 413.3 328 63.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.3e-113 412.9 334 69.2
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.3e-113 412.9 325 68.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.1e-112 410.6 329 68.1
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.9e-112 409.8 328 67.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.9e-112 409.8 328 67.4
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 5.6e-112 408.3 313 66.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.6e-112 408.3 325 73.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-111 407.1 319 68.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.6e-111 406.8 323 66.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.6e-111 406.8 348 62.1
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.6e-111 406.8 330 64.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.8e-111 406.0 328 67.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 6.2e-111 404.8 322 64.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 6.2e-111 404.8 322 64.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.1e-110 404.1 315 71.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.4e-110 403.7 321 63.6
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.1e-110 402.5 334 65.6
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.3e-110 401.7 324 64.8
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 6.9e-110 401.4 312 70.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 6.9e-110 401.4 324 68.2
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 9.0e-110 401.0 314 71.3
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.2e-109 400.6 329 66.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-109 400.6 316 64.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.5e-109 400.2 317 69.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.5e-109 400.2 329 65.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.6e-109 399.4 328 62.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.6e-109 399.4 334 65.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 5.8e-109 398.3 317 65.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.7e-108 396.7 315 67.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 4.9e-108 395.2 292 69.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.2e-107 392.5 313 68.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 7.1e-107 391.3 317 66.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.5e-106 389.0 324 63.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.5e-106 389.0 317 63.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.5e-106 389.0 348 60.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.0e-105 387.5 329 67.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.8e-105 386.7 322 65.8
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.1e-105 385.2 331 63.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 6.7e-105 384.8 312 66.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 8.7e-105 384.4 312 66.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 8.7e-105 384.4 317 65.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-104 383.6 317 65.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.9e-104 383.3 309 72.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.5e-104 382.9 317 65.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.3e-104 382.5 327 68.8
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 5.6e-104 381.7 329 67.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.8e-103 379.4 318 61.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.4e-102 377.1 323 63.8
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.3e-102 375.2 314 70.1
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.3e-102 375.2 320 60.6
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.5e-101 373.6 317 66.2
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.0e-101 373.2 325 62.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.6e-101 372.9 322 73.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.2e-100 369.8 317 62.8
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 4.9e-100 368.6 311 63.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.4e-100 367.9 329 64.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-99 365.5 337 68.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.7e-98 362.8 295 63.7
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.7e-98 362.8 324 59.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.6e-98 362.1 240 73.8
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.8e-97 360.1 323 59.4
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 5.1e-97 358.6 292 62.7
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-96 356.3 297 66.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.8e-95 352.8 289 63.7
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.9e-94 348.2 323 66.9
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.5e-93 347.1 238 76.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.5e-93 345.5 293 62.5
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 5.8e-93 345.1 327 62.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.0e-92 344.4 323 66.3
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.3e-92 344.0 300 70.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 5.0e-92 342.0 297 63.0
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.2e-91 339.3 296 65.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 7.1e-91 338.2 292 61.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.5e-88 330.5 317 55.8
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.9e-88 330.1 196 91.8
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 4.8e-87 325.5 268 74.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 8.2e-87 324.7 320 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.8e-86 323.6 296 60.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.1e-86 322.8 221 71.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 4.5e-85 318.9 220 72.7
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.3e-81 306.6 297 59.3
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 8.2e-79 298.1 236 69.5
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.1e-78 296.2 257 60.3
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.1e-78 296.2 259 60.2
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 4.1e-78 295.8 326 49.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.9e-77 292.0 213 69.0
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.7e-74 282.3 226 65.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.1e-70 268.1 230 61.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.0e-69 266.9 269 55.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.5e-69 265.8 228 63.2
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.2e-67 259.2 239 57.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.1e-62 241.5 159 74.8
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 7.7e-61 238.4 232 50.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.0e-60 238.0 292 48.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.3e-60 237.7 173 62.4
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.7e-58 229.2 205 61.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.0e-57 228.0 292 50.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.0e-57 228.0 217 57.6
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.3e-57 226.9 220 56.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.2e-55 220.3 221 53.4
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.2e-55 220.3 221 53.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 4.5e-53 212.6 226 50.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.4e-51 204.9 225 53.3
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.0e-49 201.4 131 74.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 8.8e-49 198.4 286 57.0
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.7e-47 194.1 208 57.7
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 8.3e-47 191.8 135 70.4
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.1e-43 181.4 241 53.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.3e-43 179.9 220 49.1
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 5.2e-41 172.6 238 43.3
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.3e-39 165.2 116 75.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.7e-37 160.2 137 58.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.3e-36 157.1 160 51.9
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 5.6e-35 152.5 103 86.4
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 7.3e-35 152.1 151 47.0
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-34 151.4 153 53.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-34 151.4 153 53.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-34 151.4 153 53.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.9e-31 140.2 239 33.9
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-29 134.4 108 58.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.5e-29 133.3 154 43.5
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-27 127.9 186 46.2
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.1e-25 120.2 98 74.5
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-24 117.5 116 57.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.5e-21 106.7 64 73.4
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-20 103.6 82 68.3
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 5.1e-20 102.8 65 61.5
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.6e-20 102.1 65 61.5
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 8.6e-20 102.1 63 63.5
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.3e-19 100.1 61 67.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.3e-19 100.1 61 67.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 5.6e-19 99.4 62 66.1
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 2.1e-18 97.4 63 65.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-18 97.1 173 44.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.8e-18 97.1 62 59.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.3e-17 94.0 64 57.8
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-16 91.3 97 53.6
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.5e-16 91.3 66 59.1
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.5e-16 91.3 66 59.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.5e-16 91.3 83 56.6
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 5.8e-16 89.4 119 42.9
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 6.4e-15 85.9 63 57.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 6.4e-15 85.9 63 57.1
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 2.7e-13 80.5 64 50.0
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 2.5e-11 73.9 71 56.3
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.5e-08 64.7 80 43.8
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-07 60.1 57 50.9
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.4e-06 58.2 70 45.7
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.9e-06 57.8 71 49.3


User provided reference genes

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